Sphingobacterium sp. DR205: G6053_10955
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Entry
G6053_10955 CDS
T06466
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
spdr
Sphingobacterium sp. DR205
Brite
KEGG Orthology (KO) [BR:
spdr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
spdr03016
]
G6053_10955
Enzymes [BR:
spdr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
G6053_10955
Transfer RNA biogenesis [BR:
spdr03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
G6053_10955
Prokaryotic type
tRNA splicing ligases
G6053_10955
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QIH33369
LinkDB
All DBs
Position
2593289..2594680
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AA seq
463 aa
AA seq
DB search
MGSKLSGKDLIKIGFPQHNIIQVALGLITRYRKGEKKENILLEVKTVLEVPEKFRAHPIW
AKLAEGLIQPVEARMRQLNKQMAPFTIFGENEIDEQAKKQLYEALKLPIAYRGALMPDAH
MGYGLPIGGVLATDNAVIPYGVGVDIGCRMSLSIFDLPASYFRGREFQLRNMLKENTKFG
MYDTHRDKQDHAIFSRSEFNDIPLLKSLLDKAYKQLGTSGGGNHFVEFGVVELHAVRPGW
GLAPGAYLAILSHSGSRGLGANIAKQYTDLAAKQCPLPRHVQHLAWLDLDSQEGQEYWLA
MNLAGDYARACHEDIHRRLAKALGERPVLTIDNHHNFAWKEMMDGKECIVHRKGATPAGQ
GVLGIIPGSMTAPGFIVEGRGNPLSLQSASHGAGRMMSRAACKSSFTKSAMLKELEKHDV
ELIGGALDEAPHAYKDIHRVMSLQQELVNVLGTFRPKIVRMDK
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atgggaagtaaattatcggggaaagaccttattaaaatcggttttccacagcataatata
atacaagtagccttagggctaataacacgctaccgaaaaggagaaaagaaggaaaatatc
cttttggaagtaaaaactgtgttggaggtacctgaaaaatttagggcgcatccaatctgg
gcgaagctcgctgaaggtttgattcagccggttgaagcccgtatgcggcaactaaataag
cagatggctccctttaccatttttggtgaaaatgaaattgatgagcaagccaaaaagcaa
ttgtatgaagcattgaagttacccatagcatatcggggagcattgatgccagacgcacat
atgggctatggcctgccgatcggcggggtgctggcaacagataatgccgtgataccttac
ggggtcggtgtggatatcggctgtcggatgagcttgtctatctttgatctaccggcaagt
tattttagaggaagagaattccagttgcgaaatatgctgaaagaaaacaccaaattcggt
atgtatgatacgcatcgcgataaacaggatcatgcgatttttagccgatccgaatttaac
gatatccctctgctgaaatcattgttggataaagcgtacaagcaactcgggacctcaggt
ggtggtaatcactttgtcgaatttggcgtggttgagctgcatgctgtccgcccgggctgg
gggctggcccccggtgcttatctggcgatattgtcgcatagtggatcgcggggattgggc
gcaaatattgcgaaacagtatactgacctagccgcaaagcagtgtcctttaccgcgtcat
gtgcaacatctggcgtggctggacctggacagccaagaaggtcaggagtactggttagcg
atgaatttagcgggtgattatgcgcgggcctgtcatgaggatatccacaggcgtttggct
aaggctttgggggaacgtcccgttttaaccatcgacaaccaccataactttgcctggaag
gaaatgatggatggaaaagaatgtattgttcaccgcaaaggggcgacacctgccggacag
ggggtgctggggattatcccagggtccatgactgcacccggatttatcgttgaggggcgg
ggcaatccgttgagcctgcaatcggcatcgcatggagccggacgcatgatgtcgcgggca
gcctgcaaaagtagcttcaccaaaagtgccatgctcaaggaactggagaaacatgatgtg
gaactcatcggaggcgcattggatgaagctccacatgcttataaggatattcaccgggtg
atgagcctgcagcaggagttggttaatgtacttggaacatttcgtcccaagattgttcgc
atggataaatag
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