Sphingobacterium sp. DR205: G6053_11015
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Entry
G6053_11015 CDS
T06466
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
spdr
Sphingobacterium sp. DR205
Pathway
spdr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spdr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
G6053_11015
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spdr03019
]
G6053_11015
Enzymes [BR:
spdr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
G6053_11015
Messenger RNA biogenesis [BR:
spdr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
G6053_11015
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
DEDD_Tnp_IS110
ERCC3_RAD25_C
CheB_methylest
HEM4
Utp25_C
UTP25_NTPase-like
Motif
Other DBs
NCBI-ProteinID:
QIH33379
LinkDB
All DBs
Position
complement(2609028..2610158)
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AA seq
376 aa
AA seq
DB search
MEFKQLNLIPPLLKAIAETGYTTPTAIQQKAIPVILSGQDLIGCAQTGTGKTAAFALPLL
QRLSEKNVHVQGKVMPIRALILTPTRELAIQIGENINLYRKHLKLNYCTIFGGVNQDRQV
KEIKKGVDVLVATPGRLLDLMNQKLVFLDKIEVLILDEADNMLDMGFIHDIKKILAKVPE
KRQTLFFSATMPPNIRKFAHGILHKPVEVDVTPVSSTAEKVNQSVYFIEKKEKIKLLTSL
LKQFKQERTIVFSRTKHGADKIVKLLAKNGLRAAAIHGNKSQNARQKALGEFKEDRLKIL
IATDIAARGIDIEQLPMVINYDLPNVPETYVHRIGRTGRAGLEGNAISFCDVEERPYLSD
IEKLIGLKIKVNKAGK
NT seq
1131 nt
NT seq
+upstream
nt +downstream
nt
atggaattcaaacaactcaatttaatacctcctctcctcaaggcaatcgcggaaacagga
tatacaacccccactgcaatacaacaaaaagcgatccccgttatattaagcggtcaggat
cttattggatgtgcacaaacaggcactggtaaaacagcggcatttgccctgcccttgttg
cagcgtctatccgagaaaaatgtacacgtgcagggtaaggtaatgcccatccgtgccctg
atcctcacaccaacccgtgaattagccatacagatcggtgagaatatcaatttatatcgc
aaacatctaaaactaaattactgcaccattttcggcggagtcaatcaggacagacaggtc
aaagaaataaaaaaaggagtggatgttttagtagccacaccgggccgtcttttagacctg
atgaatcagaaactggtttttctcgataaaatagaagtattgatcctcgatgaggctgac
aatatgctcgacatgggatttatccatgacattaaaaaaatcctggcgaaggttcccgag
aaaagacagacgctgtttttctcagcaacaatgccgcccaatattcgcaaatttgcacac
ggcatcttgcacaagcctgtcgaagtggacgtaactccagtaagttctactgctgaaaag
gtaaatcagtcggtatactttattgagaaaaaggagaaaataaaattgttgacgagtttg
cttaaacaatttaagcaagaacgtacgattgtattttcacgtacaaaacatggcgctgat
aagattgtcaaactgttggctaagaatggactgcgcgctgctgcaattcacggcaataaa
tcacaaaatgccagacaaaaagcattgggtgaatttaaagaagaccgactgaaaattctg
atcgctactgatattgctgcacgcggaatagatattgaacaattgcctatggtcatcaat
tatgacctacccaatgtacccgaaacctatgttcaccgcattgggcggacaggtagagcg
ggtctggaaggaaatgccatttctttctgtgatgtggaagaaagaccttatttaagcgat
attgaaaaattgatcggcttaaagatcaaagtgaataaggcaggaaaataa
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