Sphingobacterium sp. DR205: G6053_13065
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Entry
G6053_13065 CDS
T06466
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
spdr
Sphingobacterium sp. DR205
Brite
KEGG Orthology (KO) [BR:
spdr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
spdr03016
]
G6053_13065
Enzymes [BR:
spdr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
G6053_13065
Transfer RNA biogenesis [BR:
spdr03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
G6053_13065
Prokaryotic type
tRNA splicing ligases
G6053_13065
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QIH33757
LinkDB
All DBs
Position
3095758..3097179
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AA seq
473 aa
AA seq
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MENKRINGNDLIALGYKENHTLGAALKINSKRHGLTKMEMLDKFKAVLENPSEYVEDTIF
SVLAHAILGQDAVDASLIALNENPMGYTIYGESEIEAGAKEQMKVAMKLPVTVAGALMPD
AHQGYGLPIGGVLATNNAVIPYGVGVDIGCRMALSIFDLPASLLDTHTDTLKETILKHTR
FGAGNGYLKHERVEHAVLENTLFSENNLLASLKDKAWTQLGSSGGGNHFVEFGIVEFNEK
DEVLNIEKGVYLGLLTHSGSRGLGATVAAHYTKLAKSLCKLPYQAQHLAYLDLDTMEGQE
YWLAMNLAGDYASACHEVIHEKIKAALGAELLAKIENHHNFAWKERWNDQEVVVHRKGAT
PAAKGVMGIIPGSMATPGFLVRGKGEMAAIQSASHGAGRLMSRTQAIKTLSSVELKNILT
DQGITLLGAGMDEAPMAYKDIHTVMASQEELVDIVAKFSPKIVRMADDGSRED
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atggaaaataaaagaatcaacggcaatgacctgattgcattgggatataaagaaaatcat
acattgggtgctgctttgaaaatcaacagcaagcgacatggtttgacgaaaatggaaatg
ctggacaaatttaaagctgtgctggaaaatccgtccgaatatgtggaggatacgatattc
agtgtacttgcgcatgccatattaggccaggatgcagtagatgcctccctgattgcccta
aatgaaaatcccatgggatataccatttatggagaatctgaaattgaagcgggagccaag
gagcagatgaaagtcgcgatgaagcttcctgttaccgttgccggtgcattaatgccggat
gcccatcaaggttatggcctgccgatcggcggtgtactggccaccaataatgcggtgatc
ccatatggcgtaggggttgacattggttgtcgaatggccctgtccatatttgatctgccg
gcatcccttttggacacacataccgatacattaaaggaaactatcctgaaacatacgcga
tttggcgccggtaatgggtatctgaagcacgaacgcgtggagcacgcagtgttggaaaac
accttgttttcggagaataatctgcttgcatcgttaaaagataaagcatggacgcagtta
ggttcttcggggggcggcaatcactttgtggaatttggaattgtggaattcaatgaaaag
gatgaagtactgaatattgagaaaggagtttacctgggcttactgacacattccggatcc
cgaggattgggggctaccgtggctgctcactataccaaattggccaagtctttgtgtaaa
ctgccttatcaagcccagcatctggcttatctggacttagatacaatggaaggacaggag
tattggttggcaatgaatctggccggtgattacgcttctgcctgtcacgaagttatccac
gaaaagataaaagctgctttgggcgctgagctactggcaaaaattgaaaaccatcataat
ttcgcatggaaagaacgctggaatgaccaagaggttgtggtacaccgaaaaggtgctact
cctgcggcaaaaggcgtcatggggattattcccggttccatggcaacgccggggtttttg
gttcgcggaaagggagagatggcggcgatccaatcggcttcccacggcgcggggcgtttg
atgagccgtacgcaggcgatcaaaacgctttcgtccgttgaactgaaaaatattctgact
gatcagggcattactttgttgggggcggggatggatgaagcgcctatggcatacaaagac
attcatactgtcatggcctctcaagaggaattggtggatatcgtggctaagttctcacca
aagattgttcgtatggcagacgatggtagccgtgaggactag
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