Sphingobacterium sp. DR205: G6053_25740
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Entry
G6053_25740 CDS
T06466
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
spdr
Sphingobacterium sp. DR205
Pathway
spdr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spdr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
G6053_25740 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spdr03019
]
G6053_25740 (rnr)
03016 Transfer RNA biogenesis [BR:
spdr03016
]
G6053_25740 (rnr)
Enzymes [BR:
spdr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
G6053_25740 (rnr)
Messenger RNA biogenesis [BR:
spdr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
G6053_25740 (rnr)
Transfer RNA biogenesis [BR:
spdr03016
]
Prokaryotic type
tRNA degradation factors
G6053_25740 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
OB_RNR_1st
RNase_II_C_S1
DUF7430
Motif
Other DBs
NCBI-ProteinID:
QIH36071
LinkDB
All DBs
Position
6030496..6032628
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AA seq
710 aa
AA seq
DB search
MKTRKENPYKEVLTQLIIDIFEKSDNKPLNYKQVSSKLNLTDNDSKVAIADILQDNVRSG
LFVEVERGKFNLKQLKVYVTGKVDMTADGSAYIIPDDEFENDIYIAPRKLRQALHGDIVK
VHTFEKRKGGRKKEGEVVEILQRAKTDFTGTISISNNFAFFIADDRKMLHDIFIPLDNLN
GAKDKEKVVVSIIDWPSGSKNPVGTVKHVLGVKGENNTEMNAILADYGFPLEFPKKVEEE
ANKITEKISKEEIAKRRDFRGVPTFTIDPADAKDFDDAISFQKLENGNYEIGVHIADVSH
FVIPDTELDKEAFNRATSVYLVDRVIPMLPERLSNGVCSLRPHEDKLCFSAVFELDEKAT
IHDQWFGRTIIHSDRRFSYEEAQEVIETKSGDFNHEILKLNELAYILRERKFKNGAIAFE
SEEVKFTLDENGKPTGVYTKVRKDAHKLIEDFMLLANRKVAEYIGKQGRGKNKLTFVYRY
HDVPNPETLTTFSQFAARFGHKLTIKTDKETAKSLNAIMTKIEGSKEQNMLTSLAVRSMA
KAIYTTKKTSHYGLAFDYYTHFTSPIRRYPDVMVHRLLQFYLDGGTKVNAEHYEKMAEHS
SQMEKKAAEAERASIKYKQAEFLQDQIGTEYTGIVSGVTEWGMYVEIQENKCEGMVRLRD
ITDDFYVLDEKNYAIIGQRKKKKFQLGDEVQILVKKVDLDKRQIDFTLLS
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
atgaagactagaaaagaaaatccctataaagaagtactaacacagctgattattgatatt
ttcgaaaaatcagacaacaaaccgcttaattacaagcaagtttcttccaaactgaacctg
acggacaacgattccaaagtagctattgccgatattttgcaggacaatgtccggagcgga
ctatttgtcgaggttgagcgcggaaaattcaacctaaagcagcttaaggtatatgtgacc
ggaaaagtggatatgaccgctgacggctccgcctatatcatcccagacgatgagtttgag
aacgatatctatattgcaccccgtaaattaagacaggccctgcatggggatattgtcaaa
gtccatacttttgagaaaagaaaaggtggccgtaaaaaagaaggcgaagttgtcgaaatc
ttacaacgggccaaaaccgactttaccggaacgatcagcatctcaaataatttcgctttt
tttatcgccgacgaccgcaagatgctccacgacatctttatccccttggataacctgaat
ggtgccaaggacaaggagaaagtcgtggtttcgatcattgactggccgagtggcagtaaa
aaccccgtaggaacggtcaaacatgtccttggggtcaaaggagaaaacaacaccgagatg
aatgcgatcctagcggactacggtttcccattagaattcccgaagaaggtagaagaagaa
gctaataagatcacggagaaaatcagcaaggaagagattgccaaaagacgtgatttcaga
ggcgtcccaacctttacgatcgaccccgccgatgccaaagattttgacgatgccatatcg
ttccaaaagctggagaatggcaattacgagatcggtgtgcatattgccgatgtatcccat
tttgtgattccggataccgaactggacaaagaagcttttaaccgtgcgacatccgtttat
ttggtagaccgtgttattccaatgcttccggaacgtttgtccaatggcgtctgttcatta
cggccacatgaagacaaactttgtttttcggcagtatttgagctcgatgagaaggccacg
atacatgatcaatggtttggccgtacaattatccattcggacagacggtttagctatgaa
gaagcacaggaggtcatcgagacgaaatccggtgatttcaatcatgaaattttaaaatta
aatgaacttgcttatatccttcgtgagcgtaagtttaagaatggagcgatcgcatttgaa
agtgaggaagtcaaattcaccctggatgagaatggcaaacctacgggtgtatataccaaa
gtacgtaaagatgcccacaagctgattgaagactttatgttgctggccaaccgtaaggtg
gccgaatatatcggaaagcaaggtcgcggtaaaaacaaattaacgtttgtgtaccgttat
cacgatgtaccaaacccagagaccttaacgacattttcccaatttgccgcacgatttggt
cacaagctgaccattaaaacagacaaggaaacagcgaaatccctcaatgccatcatgacc
aagatcgaaggcagcaaggaacagaatatgctgacttcattggccgtgcgctccatggcc
aaggccatctatacaacgaagaaaacaagccattatggattggcatttgactattacacc
catttcacctcccctatccgtcgttatcccgatgtgatggtgcaccgtcttttgcagttc
tacctggatggtggcaccaaggtcaatgccgagcactatgaaaagatggcagagcactct
tcgcagatggagaaaaaggcagcagaagctgaacgtgcatccattaaatataaacaggca
gaattcctacaagatcagattggcacagaatatactggtatcgtatcaggtgtgaccgaa
tggggtatgtatgtggagattcaggagaacaagtgtgagggtatggtacgcttgcgcgat
atcacggatgatttctatgtactggatgagaagaactatgcgattattggccagcggaag
aaaaagaaattccagctgggtgatgaggtgcagatcctcgtaaagaaagtggatctggat
aaaaggcagatagattttacgttgttgtcgtag
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