Serratia proteamaculans: Spro_0438
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Entry
Spro_0438 CDS
T00595
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
spe
Serratia proteamaculans
Pathway
spe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Spro_0438
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spe03019
]
Spro_0438
03016 Transfer RNA biogenesis [BR:
spe03016
]
Spro_0438
Enzymes [BR:
spe01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Spro_0438
Messenger RNA biogenesis [BR:
spe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Spro_0438
Transfer RNA biogenesis [BR:
spe03016
]
Prokaryotic type
tRNA degradation factors
Spro_0438
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
WHD_RNase_R
S1
Rho_RNA_bind
HTH_20
RNase_II_C_S1
LexA_DNA_bind
Motif
Other DBs
NCBI-ProteinID:
ABV39546
UniProt:
A8G8V6
LinkDB
All DBs
Position
489571..492057
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AA seq
828 aa
AA seq
DB search
MSQDPFLEREAEKYESPIPSREFILAHLAKRETPASREELAKELNLTGEEPLEALRRRLR
AMERDGQLIFTRRQCYALPERLDLLRGTVIGHRDGFGFLRIEGSKDDLYLSAEQMKMAIH
GDVVLAQAMAADRKGRREARIVRVLVPKTSQIVGRFFMDAGTGFVVPDDSRLSFDILIPA
EAASGARMGFMVVVELTQRPTSRTKAVGKIVEILGDKMGTSMAVDIALRTHEIPHVWPPQ
VEKQVADLSEQVPEAAKKGRVDLRQLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA
DVSYYVRPRTALDDEARNRATSVYFPSEVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTIS
AQGRLSTAKFYEAVMSSHARLTYNKVWHILQGDQELREHYHPLVKHLEELHTMYKVLDQA
RAERGGIAFETEEAKFIFNAERRIERVEPTVRNDAHKLIEECMIMANVAAARFVEKNNEP
ALFRVHDRPSDDHITALRSVLGELGLTLGGGNKPQPKDYATLMDEVSERPDHEMLQTMLL
RSMKQAVYDPENRGHFGLALASYGHFTSPIRRYPDLAMHRAIKYQLAKEHGEPKERWTPT
GGWHSEFEEMLQLGEHCSMAERRADEATRNVADWLKCDFMQDHVGEVFSGIIASVTGFGF
FVRLNDLFIDGLVHVSSLDNDYYRYDNIGQRLIGESSGVVYRLGDTVEIRVEAVHMDERK
IDFALVSSTRKPRGEGKTERDRAKNGGQRTLRGGAGAGRTSAPRKRRGGKPPANFEPDSA
FRKDEAKPADKVKKDKKAKAKKVSDKTRKIASATKAKRAGKKKGAEQA
NT seq
2487 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaagatccattcctggaacgagaagcagaaaaatatgaatccccaatcccgagc
cgtgaattcattctggcccatctggcgaaaagagaaacgccggccagccgcgaagagctg
gccaaagagctgaatttaaccggtgaagagccgttagaagcgttgcgtcgccgtttgcgt
gcgatggaacgtgacggtcagttaatatttacccgccgtcagtgctatgcgctgccggaa
cgtctcgatctgctgcgcggtaccgttatcggccaccgtgatggctttggtttcctgcgt
attgaaggcagcaaagacgacctgtatctgtcagctgagcagatgaaaatggcaatccac
ggtgatgtggtgctggcacaggcaatggctgcagatcgcaagggccgccgtgaagcgcgt
atcgtccgtgtgctggtgccgaaaaccagccaaatcgtcggtcgcttctttatggatgcc
ggtaccggctttgtggtgccggatgatagccgcctgagctttgatatcctgatcccggcc
gaagcagccagtggcgcacgcatgggctttatggtggtggttgagctgacccaacgtccg
accagccgcaccaaggcggtgggcaagatcgttgagatcctcggcgataaaatgggcacc
agcatggcggtggatatcgctctgcgcacccatgagatcccgcatgtttggccgccacag
gtggaaaaacaggtcgccgatctcagtgaacaggtacctgaagccgccaagaaaggccgt
gtcgatctgcgtcagttacctttggtgaccattgacggcgaagacgcacgcgatttcgat
gacgcggtttactgcgagaaaaaacgtggcggcggttggcgcctgtgggtagccattgcc
gacgtcagctactacgtgcgtccgcgcaccgcgctggatgatgaagcgcgcaaccgtgct
acctcggtgtacttcccatcggaagtcatcccgatgctgccggaagtgctgtccaacggc
ctgtgttcgcttaacccgcaggttgaccgcctgtgtatggtgtgcgagatgaccatctcc
gcccaggggcgcctgtcgacggccaaattctatgaagcggtaatgagctctcatgcccgt
ttaacctacaacaaagtctggcacatcttgcagggcgatcaggagctgcgtgagcattat
cacccgctggttaagcacctggaagaactgcacacaatgtacaaggtgttggatcaggcg
cgcgccgaacgtggcggtattgctttcgaaaccgaagaagccaagtttatcttcaacgcc
gaacgtcgtattgaacgtgttgagccaacggtgcgtaacgacgcccacaaactgatcgaa
gagtgcatgatcatggcgaacgttgccgcggcgcgcttcgttgagaagaataacgagccg
gcgctgttccgcgtacatgaccgtccaagcgacgatcacattaccgccttgcgcagcgtg
ctgggcgaactgggtctgacgctgggcggcgggaacaagccgcagccgaaggactacgcc
accttgatggatgaagtgtccgaacgtcctgaccatgaaatgctgcaaaccatgctgctg
cgttccatgaagcaggcggtctacgatccggaaaaccggggccactttggtctggcgctg
gcttcttatggccacttcacctcgccgatccgtcgttatccggatctggcgatgcaccgc
gcaatcaaataccagctggctaaagagcacggcgagccgaaagagcgctggacgccgacc
ggtggctggcacagcgagtttgaagaaatgctgcagctgggcgagcactgttcgatggcc
gagcgccgcgctgatgaagcgacgcgtaacgttgccgactggctgaaatgcgactttatg
caggatcacgttggcgaagtgttcagcggtattattgccagcgtgaccggctttggtttc
ttcgtccgtctgaacgatctgtttatcgacggtctggtgcacgtatcatcgctggataat
gactattatcgctacgataatatcggccagcgtctgattggcgaatcctccggcgtggtt
tatcgcctgggcgatacggtagagatccgcgttgaagcggtgcatatggacgagcgtaaa
attgacttcgctttggtctccagcactcgcaagccgcgtggtgaaggcaaaaccgaacgc
gatcgcgccaaaaatggtggccaacgcaccctgcgtggcggggctggcgcaggccgcact
tccgctccgcgtaaacgtcgcggcggcaaaccgcccgccaattttgagcctgacagcgcc
ttccgtaaagacgaagccaaacccgctgacaaggtgaagaaagacaaaaaggcgaaagcc
aagaaagtgtccgacaaaacccggaaaatagcgtcggcgaccaaggccaaacgcgccggc
aagaagaaaggtgctgagcaggcttaa
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