Serratia proteamaculans: Spro_1998
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Entry
Spro_1998 CDS
T00595
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
spe
Serratia proteamaculans
Pathway
spe03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
spe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Spro_1998
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spe03400
]
Spro_1998
Enzymes [BR:
spe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Spro_1998
DNA repair and recombination proteins [BR:
spe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Spro_1998
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ABV41101
UniProt:
A8GDB1
LinkDB
All DBs
Position
complement(2186335..2189865)
Genome browser
AA seq
1176 aa
AA seq
DB search
MICARAKFNTLIKDTFMSISDNRNRSASSSSSRYSLPERAGDLRQLGQLTGSACAVECAE
IVERHNGPVMLIAPDMQNALRLRDEIQQFTDQMVTTLSDWETLPYDSFSPHQEIISARLS
SLYHLPTMVRGVIILPVNTLMQRVCPHEFLHGHALVMKKGQRLSRDKLRAQLEQAGYRSV
DQVMEHGEFATRGALLDLFPMGSEEPYRIDFFDDEIDSLRTFDVDNQRTLSEVDAINLLP
AHEFPTDKNAIELFRSQWREQFEVRRDAEHIYQQVSKGTWPAGIEYWQPLFFSQPLPSLF
SYLPDNTLIVNTGNLESAAERFWQDVNQRYESRRVDPMRPLLAPDSLWLRVDALFGELKA
WPRMALKTEELPAKAGNTNLDYRTLPDLAVQAQQKAPLDSLRHFIESFDGSIIFSVESEG
RRETLQDLLGRIKLRPSLIQHLDQAEAAGRYMMVGASERGFLDGMRNRALICESDLLGER
VSRRRQDNRRTINTDVLIRNLAELHPGQPVVHLEHGVGRYVGLTTLEAGGIKAEYLILSY
AGEDKLYVPVSSLHLISRYAGGADENAPLHKLGGDAWSRARQKAAERVRDVAAELLDIYA
QRAAKTGFAFKHDREQYQLFCQAFPFETTPDQEQAINAVLSDMCQPLAMDRLVCGDVGFG
KTEVAMRAAFLAVENGKQVAVLVPTTLLAQQHFDNFRDRFATWPIRIEMMSRFRSAKEQQ
QVMDDAVDGKVDIIIGTHKLLQSDLRWKDLGLLIVDEEHRFGVRHKERIKAMRADVDILT
LTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLVVREAILREVLRGGQVY
YLYNDVENIEKAAAKLAELVPEARIAIGHGQMRERDLERVMNDFHHQRFNVLVCTTIIET
GIDIPSANTIIIERADRFGLAQLHQLRGRVGRSHHQAYAYLLTPPPKAMSTDAHKRLEAI
ASLEDLGAGFALATHDLEIRGAGELLGEDQSGQMTTVGFSLYMELLESAVDALKNGREPS
LEDLTSNQTEVELRMPALLPDDYIPDVNTRLSFYKRIASAKNDGELEELKVELIDRFGLL
PDPARNLLQSAALRQHAQLLGIKRIEGNERGGFIEFGEKNKVDPGYLIGLLQSNPQIYRL
DGPSKLKFMLDLTDRQKRLKFTEELLTAFREHTLAA
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
gtgatttgtgccagggcgaaatttaacacattgattaaagataccttcatgagcatctcc
gataaccgtaaccgttctgcttcttcttcatcctcccgttattccctgcctgagcgcgcg
ggcgatttgcgccagttggggcaactgaccggctcggcctgtgccgtggaatgcgccgag
attgtcgaacgtcacaacgggccggtgatgctgatcgccccggacatgcaaaatgccctg
cgtctgcgcgacgaaattcagcagtttaccgatcaaatggtcaccacgctgtccgactgg
gaaaccctgccctacgacagcttctcgccgcatcaggaaatcatctccgcccgtctgtcg
agcctgtaccatctgccgaccatggtgcgcggcgtgatcattctgccggtcaatactctg
atgcagcgcgtttgcccgcacgaattcctgcacggccacgcgctggtgatgaaaaaaggc
cagcgcctgtcgcgcgacaaactgcgcgctcaactggagcaggccggctaccgcagcgtt
gatcaggtgatggaacatggtgaatttgccacccgcggtgcactgcttgatctgttccct
atgggcagcgaagaaccttaccgcatcgatttcttcgatgacgagatcgacagccttcgc
acctttgatgtcgacaaccagcgcacgctcagcgaagtcgatgccatcaacctgctgccg
gcccatgaatttccaaccgataaaaatgccatcgagctgttccgcagccagtggcgtgag
cagtttgaggtgcgccgcgacgccgaacatatttatcagcaggtcagcaaaggcacctgg
ccggccggtatcgaatactggcagccgctattcttcagccagccactgccttcgttgttc
agttatctgccggacaacacgctaatcgtcaataccggtaatctggagagcgccgccgaa
cgcttctggcaagacgtcaaccaacgctatgagagccgccgcgtcgatcctatgcggccg
ctgttggccccggacagcctgtggttacgggttgatgcgctgtttggtgaactgaaagcc
tggccgcgcatggcgctgaaaaccgaagaactgcctgccaaagccggtaacaccaatctg
gattaccgcacactgccggatctggcggtacaagcccagcagaaagcgccactggacagc
ctgcgtcactttattgaaagcttcgacggcagcattattttctcggtcgaaagtgaggga
cgccgcgaaacgctgcaggatctgctcggccgcatcaagctccgtccttcactgatccag
catctcgatcaggccgaggcggcgggccgttacatgatggtcggcgcctccgaacgcggt
ttcctcgacggcatgcgcaaccgggccttgatctgtgaaagcgatctgctcggtgaacgc
gtcagtcgccgtcggcaagacaatcgtcgcaccatcaataccgatgttctgatccgcaat
ctggcagaattacaccccggccaaccggtggtgcatctggaacacggcgttggccgttac
gttggtctgactacgctggaagccggtggcatcaaggccgaatatctgatcctgtcctac
gccggtgaagataaactctacgtgccggtctcgtcgttgcacctgatcagccgttacgcc
ggcggagcggacgaaaacgcgccgctgcacaaactgggcggtgatgcctggtcgcgcgca
cggcaaaaagccgccgagcgggtgcgcgacgtggcggcagaactgctggatatttacgcc
cagcgcgccgccaaaaccggctttgcctttaaacatgaccgcgagcagtatcagctgttc
tgccaggccttcccgtttgagaccaccccggaccaggagcaggcgattaacgccgtgctg
agcgacatgtgccagccactggccatggaccgcctggtgtgtggtgacgttggcttcggc
aaaaccgaagtggcaatgcgcgccgccttccttgcggtggaaaacggcaaacaggttgcg
gtactggtgccaaccaccctgctggcacagcagcatttcgacaacttccgcgatcgcttc
gccacctggccgatccgcattgagatgatgtcgcgcttccgcagtgccaaggaacagcaa
caggtgatggacgatgccgtcgacggcaaagtagatatcatcatcggcacccacaaactg
ctgcagagcgatctgcgctggaaagatctggggctgctgatcgtcgatgaagaacaccga
ttcggtgtgcgccacaaagaacgcatcaaggcgatgcgtgccgatgtggatatcctgacg
ctgaccgccacgccgatcccgcgtaccctgaatatggccatgagcggcatgcgcgacctg
tcgattattgccaccccaccggcccgccgtctggcggtaaaaacctttgtacgcgagtac
gacagcctggtggtacgtgaggcgatcctgcgcgaagtactgcgcggcggacaggtttac
tacctgtataacgacgttgaaaacatcgaaaaagccgcagcaaaactggcggaattagtg
ccggaagcgcgcattgccatcggccacggccaaatgcgtgaacgcgatctggaacgggtg
atgaatgacttccatcaccagcgctttaacgtactggtctgcaccaccattatcgaaacc
ggcatcgacattcccagcgccaataccataatcatcgagcgtgccgatcgcttcgggctg
gcgcagctgcaccagctacgtggccgcgtcggacgttcgcaccatcaggcctacgcctat
ctgctgacaccgcccccgaaagccatgagcaccgacgcccataaacgcctggaagccata
gcatcactggaagacctgggtgccggctttgccctggccacccacgatctggagatccgc
ggcgcaggcgaactgctcggtgaagaccagagcggccagatgaccaccgtgggtttctcg
ctgtatatggaactgctggaaagcgcagtggacgcacttaaaaacggacgcgagccttct
ctggaagatctcaccagcaaccagaccgaagtggagctgcgcatgccggccctgctgccg
gacgattacattccggacgtcaatactcgcctgtcgttctataagcgcatagccagcgcg
aaaaacgacggtgaactcgaagagttgaaggtggagctgattgaccgctttggcctgctg
ccggatccggcgcgcaacctgctgcaaagcgcggcgctgcgtcaacatgcgcagttactt
ggcatcaagcgcatcgaaggtaatgaacgcggtgggttcattgagtttggcgaaaaaaac
aaggtcgatccaggctatttaattgggctgttgcaaagcaatccgcagatctatcgcctg
gacgggccgagcaagctgaaatttatgctggatctgaccgatcgccagaaacgcctgaaa
tttaccgaagagctgttgaccgcattccgcgagcatacgctggcggcctga
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