Serratia proteamaculans: Spro_3890
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Entry
Spro_3890 CDS
T00595
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
spe
Serratia proteamaculans
Pathway
spe03410
Base excision repair
spe03430
Mismatch repair
spe03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
spe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Spro_3890
03430 Mismatch repair
Spro_3890
03440 Homologous recombination
Spro_3890
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spe03400
]
Spro_3890
DNA repair and recombination proteins [BR:
spe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Spro_3890
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Spro_3890
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Spro_3890
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
DUF2065
Motif
Other DBs
NCBI-ProteinID:
ABV42985
UniProt:
A8GIP5
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All DBs
Position
complement(4310371..4312104)
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AA seq
577 aa
AA seq
DB search
MSIKTQLRRRAATDDSHLPASLHPLLRRLYALRGVQAEQELERSVKGMLPWQQLDGIDTA
VGILQQALAASRRIMVVGDFDADGATSTALTVLALRSMGGSAVDYLVPNRFEDGYGLSPE
VVEQAATRGAELILTVDNGISSHAGVDVAHAKGMQVLVTDHHLPGETLPAAEAIVNPNLR
GCEFPSKSLAGVGVAFYLMLALRARLRDSGWFEQRALAMPNLAELLDLVALGTVADVVPL
DANNRILVYQGLNRIRAGKCRPGIRALLEVANRDARQLAANDLGFALGPRLNAAGRLDDM
SIGVALLLSDDIAQARMLANDLDALNLTRREIEQGMQVEALQLCDELERSSTALPYGLAM
YHPEWHQGVVGILASRIKERFHRPVIAFAPAGEGILKGSGRSIAGLHMRDALERLDTLNP
GLMMKFGGHAMAAGLSLEESKFDEFRQRFGDLVGEWLDPAMLEGVIWSDGELAMQELSLE
TAELLREGGPWGQAFPEPTFDGTFRILQQRLVGEKHLKLMVEPLGGGPLLDGIAFNVDTT
LWPDSSVREVELAYKLDVNEFRGNRNVQLLIQHLWPR
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
gtgagcatcaaaacacaactacgccgccgtgcggcgacggacgacagccatttgccagcc
agcctgcacccgctgttgcgccgtttatatgcgctgcgcggcgttcaggctgagcaggaa
ttggaacgcagcgtcaaaggcatgctgccgtggcagcagttggatggcattgacaccgcc
gttggcattctgcaacaggcgctggcggcgagtcgccgcatcatggtggtgggggacttc
gacgccgatggcgccaccagtaccgcgttgacggtgctggcactgcgcagcatgggcggc
agtgcggtcgattatctggtgccgaatcgttttgaggacggctacggcctgagtcccgaa
gtggtcgaacaggcggcgacgcgcggtgccgaattgatcctcacggtggataacggcatc
tcttcccatgcgggagtggacgtggcccacgccaaaggcatgcaggtgctggtgactgac
caccacctgccgggggaaaccctgccggcggcggaagcgatcgtcaacccgaacctgcgt
ggctgtgagttcccttccaaatccctggccggcgtcggtgtggctttttatctgatgctg
gcgctgcgtgcgcggctgcgtgacagcggctggttcgaacaacgtgcgctggcgatgccg
aacctggcggaactgctggatctggtcgcgctcggtacggtggcggacgtggtgccactc
gacgccaacaaccgcattctggtgtaccagggcctgaaccgcatccgcgccggtaaatgc
cggccgggcatccgggcgctgctggaagtggctaatcgtgatgcacgtcagctggcggcc
aacgatctcggctttgcgctggggccgcggctcaacgccgccgggcggctggatgatatg
tcgatcggcgtggccttgttgttgagtgatgacatcgcgcaggcgcgtatgttggctaac
gatcttgatgcgctcaatctgacacggcgtgagattgaacagggcatgcaggttgaagct
ctgcagctgtgcgacgaactcgagcgcagcagcaccgccttgccatacgggctggcgatg
tatcatccggagtggcatcagggcgtggtggggattttggcctcacggatcaaggagcgc
ttccatcgtccggtgatagcctttgcaccggcaggtgagggcattcttaaagggtcgggc
cgttcgatagccggtctgcacatgcgtgatgcgctggagcggttggatacgctgaatccg
gggttgatgatgaagttcggtggtcatgccatggcggccgggctgtcgctggaagagagc
aaattcgacgagttccgccagcgctttggcgatctggtgggtgaatggctcgatccggcg
atgctggaaggggtgatttggtctgacggcgaactggcgatgcaggaactttcgctggaa
acggcggagctgttgcgcgagggcggcccctggggccaggcgttcccggaaccgaccttc
gatggcacattccgcatcctgcagcagcggctggtgggcgagaaacacctgaaactgatg
gtggaaccgcttggcggcggcccgctgctggacggtatcgctttcaatgtcgataccacc
ctgtggcccgacagcagcgtgcgcgaagtggagctggcctacaagctcgacgtcaacgag
ttccgtggcaaccgcaacgtgcagttactgatccagcacctctggccgcgttga
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