Serratia proteamaculans: Spro_4412
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Entry
Spro_4412 CDS
T00595
Name
(GenBank) diguanylate cyclase/phosphodiesterase
KO
K18765
RNase E specificity factor CsrD
Organism
spe
Serratia proteamaculans
Brite
KEGG Orthology (KO) [BR:
spe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spe03019
]
Spro_4412
Messenger RNA biogenesis [BR:
spe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Spro_4412
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GAPES4
GGDEF
Hrs_helical
RH1
Motif
Other DBs
NCBI-ProteinID:
ABV43506
UniProt:
A8GK66
LinkDB
All DBs
Position
complement(4885291..4887222)
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AA seq
643 aa
AA seq
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MRFTTKLSALITLLVALAMFLMLMGCSYSYFYVTQERLDRRFNSLMTSLDQAMLRESPQE
QEQWLPLVMRPLGIVAVSVDTSHSNLLSYHLPTVKQPWESLNGYRQVSLPLMQHPGASLR
ITYIDPFASDVRSLQSTAAVTLSIVVMVVILLLSLRWLRDQADGEDRLERRARRILNGER
ESVMQGDVREWPANVSGALDRLLADLAEAREERSRVDTLIRAFAAQDAKTGLNNRLFFDN
QLTTQLEEEGSHGIVMMVRLPDFDTLRETHGNSAVQELMYSLVNLLSTFVMRYPAALLAR
YFHSDFTVLLPHRTLKEADGIASQLVHAIDALPSTALIDREAFLHIGIVAYRSGQSTEQV
IDHAEQATRHATLQGENGWYVYDSQVPEKGRGSVKWRTLLEQVLARGGPRLYQKPAVTVE
GEVHHREIMSRIYDGTQELLPSEYMPLVQQLGLAESYDRQHLSRILPLLALWPEETLAFT
LSVDSLLQRTFQRWLRDSLLQCEKSHRRRILIELAEADVCQHIDRLRPVLRLLSGLGCRL
AVSQAGLTVVSTSYIKSLPVELVKLHPGLVRSIDKRDENQLFVQSLTGACEGTSTQVFAA
SVRTRNEWQTLKDRGILGGQGDFFASPEPIDAGRKKYSRRYRV
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
atgcgatttaccaccaagctctctgcattgatcaccctgcttgttgctctggcgatgttt
ttgatgctgatgggctgctcatacagttacttttacgtcactcaggagaggctggatcgc
cgcttcaattcgctgatgacctcgctcgatcaggccatgctgcgtgaatctccacaggaa
caggaacaatggttaccgctggtgatgcgtccgcttggtatcgtggccgtcagcgtggat
accagccacagcaatcttctttcttatcatctgccaacggtaaagcagccctgggaatcg
ctcaacggctaccggcaggtttccctgccgttgatgcagcatcccggcgcttcgctacgc
attacctatattgaccctttcgccagcgacgtgcgttcgttgcaatccactgcggctgtc
actttgtcgatcgtcgtgatggtggttatcttgctgctcagtttgcgttggttacgcgat
caggccgacggggaggaccggctggaacgccgtgcacgccgtattcttaatggcgaacga
gagagcgtgatgcagggcgacgtgcgcgaatggccggcaaacgtcagcggagcactcgat
cgcctgctggcggatctggcggaagcgcgcgaggagcgtagccgggtcgatacgctgatc
cgcgcctttgccgctcaggacgccaaaaccgggctgaacaaccgattgttctttgataac
caactgaccacgcagttggaggaggaaggttcgcacggcattgtcatgatggtgcgatta
ccggatttcgacacgctgcgggaaacccacggcaacagtgcggtgcaagaactgatgtat
tcgctggtcaatctgttgtcgaccttcgtgatgcgctacccggcggcgttgctggcgcgc
tatttccacagcgatttcaccgttttgttgccgcatcgcacgctgaaagaggcggacggc
attgcttcacagttggttcatgccattgacgccttgccttcgacggcgcttatcgatcgc
gaggcgtttttgcatatcggtattgtggcctaccgcagtggacaaagtaccgaacaggtg
attgatcatgcagagcaggccacgcgccacgcgacgctgcagggggaaaacggctggtat
gtctacgacagccaggtgccggaaaaagggcgcggcagcgtcaaatggcgcactctgttg
gaacaggttctggcacggggcgggccacggttgtaccagaaaccggcagtgacggtggag
ggggaagttcatcaccgggagatcatgagccggatatacgatgggacccaggaactgctg
ccatctgaatatatgccgttggtgcagcagttggggctggcggagagttacgaccgccag
catttgagtcgcattcttcctttactggcgctgtggcctgaagaaacgctggcatttacg
ctgtccgtagattcattattgcaacgcactttccagcgttggctgcgtgatagcctgtta
cagtgtgaaaaaagtcatcgtcggcgaattctgattgaacttgcagaggcagacgtgtgt
caacatatcgaccgtttacgcccggtgttgagattactctctggattggggtgtcgtctg
gccgtgtcccaggcggggttaaccgtagttagtacctcctatatcaagtccttaccggtg
gaactggtcaagctccaccctggtttggtgcggagtattgataagcgggatgagaatcag
ctgttcgttcagagcctgacgggtgcctgcgaagggaccagtacccaggtttttgccgcc
agcgtgcggacgcgtaatgaatggcagacgctgaaagatcgcgggatcctcggcgggcag
ggtgactttttcgcgtcgccggaaccgatagacgcagggcgtaaaaaatattcgcgtcgt
tatcgcgtttaa
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