Sphingopyxis sp. EG6: SPYCW_0388
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Entry
SPYCW_0388 CDS
T10392
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
speg Sphingopyxis sp. EG6
Pathway
speg03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
speg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SPYCW_0388
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
speg03021
]
SPYCW_0388
03400 DNA repair and recombination proteins [BR:
speg03400
]
SPYCW_0388
Enzymes [BR:
speg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SPYCW_0388
Transcription machinery [BR:
speg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SPYCW_0388
DNA repair and recombination proteins [BR:
speg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SPYCW_0388
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
RNA_pol_L_2
DUF211
IDH
HHH_XRCC3_RpoA
Motif
Other DBs
NCBI-ProteinID:
BBB07372
LinkDB
All DBs
Position
complement(407072..408130)
Genome browser
AA seq
352 aa
AA seq
DB search
MTVNIRNWQELKKPSNLEIKAGSDGKRKATFVAEPLERGFGLTLGNALRRVLLSSLQGAA
ITSIKIENVLHEFSSLAGVREDVTDIVLNVKQIALKMEGEGPKRLQLSATGPATVKAGDI
MVSGDIKVMNPNHVICHLDDGATLNMELVADTGKGYVPATANRPVDAPIGLIPVDSLYSP
VRQVAYKVDNARIGQELDYDKLNLTVETDGTVTPEDAVAYAARILQDQLQVFVHFEEAMN
DSGMIGMAAPSTTADESDVNQLNRFLLKKVDELELSVRSANCLKNDNIIYIGDLVQKTEA
EMLRTPNFGRKSLNEIKEVLSSMGLRLGMDIPGWPPENIEEMAKKLEQELLG
NT seq
1059 nt
NT seq
+upstream
nt +downstream
nt
atgactgtcaatatccggaactggcaggaattgaagaagcccagcaacctggaaatcaag
gctggcagcgacggcaagcgcaaggcgaccttcgtcgccgaaccgctcgagcgcggtttc
ggcctgacgctcggcaacgcgctgcgccgcgtgctgctctcgtcgcttcagggtgcggct
atcacgtcgatcaagatcgagaatgtgctccacgaattctcgagcctggccggtgtgcgc
gaagacgtcaccgacatcgtcctcaacgtcaagcagatcgcgctgaagatggaaggcgaa
ggcccgaagcggcttcagctgtcggcgaccggtcccgcgaccgtcaaggccggcgacatc
atggtgtcaggcgacatcaaggtgatgaacccgaaccacgtcatctgccacctcgacgat
ggcgcgacgctgaacatggaactcgttgccgacaccggcaagggctatgttccggcgacc
gcgaaccgtccggtcgacgcgccgatcggcctgatcccggtcgactcgctctactcgccc
gtgcgccaggtcgcctacaaggtcgacaatgcccgcatcggtcaggaactggactatgac
aagctgaacctgaccgtcgaaaccgacggcacggtcacccccgaagatgccgtggcctat
gccgcgcgcatccttcaggaccagctgcaggtcttcgtccacttcgaagaagcgatgaac
gacagcggcatgatcggcatggcggcgccgtcgaccaccgccgatgaatcggacgtcaac
cagctcaaccgcttcctgctgaagaaggtcgatgagctcgaactgtcggtccgttcggcc
aactgcctgaagaacgacaacatcatctatatcggtgacctcgttcagaagaccgaagcc
gaaatgcttcgcaccccgaactttggccgcaagtccttgaacgaaatcaaggaagtgctg
tcgtcgatgggtctgcgtctgggcatggacatccccggctggccgccggaaaatatcgag
gaaatggccaagaagctcgaacaggagctgctgggttaa
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