Sphingopyxis sp. EG6: SPYCW_0434
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Entry
SPYCW_0434 CDS
T10392
Name
(GenBank) DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
speg Sphingopyxis sp. EG6
Brite
KEGG Orthology (KO) [BR:
speg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
speg03032
]
SPYCW_0434
03400 DNA repair and recombination proteins [BR:
speg03400
]
SPYCW_0434
Enzymes [BR:
speg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
SPYCW_0434
DNA replication proteins [BR:
speg03032
]
Prokaryotic type
DNA Topoisomerases
SPYCW_0434
DNA repair and recombination proteins [BR:
speg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
SPYCW_0434
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Motif
Other DBs
NCBI-ProteinID:
BBB07418
UniProt:
A0A2Z5U8X2
LinkDB
All DBs
Position
complement(446539..447549)
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AA seq
336 aa
AA seq
DB search
MPSPRLIHVDDGLPGISRERVGDRWRYRDPQGRIIRDRDEIARLNAIALPPAYEDAWYCP
AANGHILATGYDARGRKQYRYHPGFRLAREADKYDRCAAFGHALPLLRARLESDLARLSL
CQERVVGAVVRLLDLAALRVGNEQYVAANKSFGATTLRRRHAKLTGQTLRLSYRAKGGAQ
REVAISDRNITTLVRRLQDLPGQHLFQYRDDSGVCAVGSDDVNAYIREAMGGDFSAKHFR
TWTASVEAYAYLFDAPEPPTLKAMVEHVADRLGNTPAIARKSYVHPAMIAAAQARGDFAA
AAGPLPRAAKYLSRYERGFLTYLERAPDAAALLRSA
NT seq
1011 nt
NT seq
+upstream
nt +downstream
nt
atgccctccccgcgcctgatccatgtcgacgacggcctgcccggcatcagccgcgagcgc
gtcggcgaccgctggcgataccgcgacccgcaaggccggatcatccgcgaccgcgatgag
attgcccggctgaacgcgatcgccctgccaccggcgtatgaagacgcctggtattgcccc
gccgccaacggtcatatcctggcgaccggttacgatgcgcgcgggcgcaagcaatatcgc
tatcaccccggtttccggctggcgcgcgaggccgacaaatatgaccgctgcgccgccttt
ggccatgcgctgccgctgctccgcgcgcgactggagagcgatctggcgcggctgagcctg
tgccaggagcgcgtcgtcggcgcggtcgtccgcttgctcgatctcgccgcgctgcgcgtc
ggcaacgaacaatatgtcgcggcgaacaagagtttcggcgcaaccacactgcgccgccgc
cacgccaaactgaccggtcagacgctgcgcctgagctaccgcgccaagggcggtgcgcag
cgcgaggtggctatcagcgaccgcaatatcacgacgctggtgcggcgattgcaggacctg
ccggggcagcatctgttccagtatcgcgacgacagcggtgtctgcgcggtcggatcggac
gatgtcaacgcctatatccgcgaggcgatgggcggcgatttcagcgccaagcatttccgc
acctggaccgcgagcgtcgaggcttatgcctatctgttcgatgcgcccgagccgccgacc
ctgaaagcgatggtcgaacatgtcgccgaccggctgggcaacaccccggcgatcgcgcgt
aaatcctatgtccaccccgcgatgatcgcggcggcgcaggcgcgcggcgattttgccgcc
gccgcggggccgttgccgcgcgcggcgaaatatctttcgcgttacgagcgcgggtttttg
acctatctggagcgggcgcccgatgccgcggcgctgcttcgttccgcctga
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