Sphingopyxis sp. EG6: SPYCW_1064
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Entry
SPYCW_1064 CDS
T10392
Symbol
uvrB
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
speg Sphingopyxis sp. EG6
Pathway
speg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
speg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SPYCW_1064 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
speg03400
]
SPYCW_1064 (uvrB)
DNA repair and recombination proteins [BR:
speg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SPYCW_1064 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
SPYCW_1064 (uvrB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_30
UB2H
Kinesin
DUF87
DUF2963
AAA_16
Microtub_bd
FATC
AAA_22
Orbi_NS3
SWI2_SNF2
AAA_7
Motif
Other DBs
NCBI-ProteinID:
BBB08048
LinkDB
All DBs
Position
complement(1078108..1080294)
Genome browser
AA seq
728 aa
AA seq
DB search
MAIQIRTSLDEIDTAEGYVPHRPARPDKVEGGKRFELVSDYEPAGDQPTAIRELVNTALT
GERDQVLLGVTGSGKTFTMAKVIDELQRPALILAPNKILAAQLYGEFKSFFPNNAVEYFV
SYYDYYQPEAYVPRSDTYIEKESSVNEAIDRMRHSATRALLERDDVIIVASVSCLYGIGS
VETYSAMIFDLKKGQVADSREIIRKLVALQYKRNDQAFARGNFRVRGDSLEIFPSHYEDM
AWRVSFFGDEIEEITEFDPLTGKKIATLNYVRVFANSHYVTPGPTLKQASEAIRHELAER
LKELEAEGRLLEAQRLEQRTNFDLEMIAATGSCAGIENYSRFLTGRLPGEPPPTLFEYLP
DNALLFVDESHQTIPQIGAMSKGDHRRKITLAEYGFRLPSCIDNRPLRFAEWDMMRPQTV
SVSATPGTWEMDRTQGVFAEQVIRPTGLIDPPVEIKPVEEQVDDLIAEAKKTAAAGYRTL
VTTLTKRMAEDLTEFLHEAGLKVRYMHSDVETLERIEIIRDLRLGVFDVLVGINLLREGL
DIPECGLVAILDADKEGFLRSETSLVQTIGRAARNVDGRVILYADRITGSMERAMRETDR
RREKQKAYNEAHGITPTTIKRNIGDIIAHVASKDGVTIDIGDDKPAHMVGHNLRAYIAEL
EKKMRDAAADLEFEEAGRLRDEIRKLEADELGLPPDEQVAPRVGRSNEGKPGTRKGRFGK
QSKTKWGR
NT seq
2187 nt
NT seq
+upstream
nt +downstream
nt
atggcaattcagattcgtacatcgctcgatgaaatcgacacggcggagggctatgtcccg
caccgtcccgcgcgccccgacaaggtcgaagggggcaaaagatttgaactggttagtgat
tatgaaccggccggcgaccagcccaccgcgatccgcgaactcgtaaacaccgcgctgacc
ggcgaacgcgaccaggtgctgctcggcgtcaccggatcgggcaagacctttaccatggcc
aaggtgatcgacgagctgcaacgccccgcgctgatcctggcgccaaacaaaatcctcgcg
gcgcaattatatggcgaattcaagagcttcttcccgaacaatgcggtcgaatatttcgtc
agctattacgactattaccagcccgaggcctatgtgccgcggtcggacacctatatcgag
aaggaaagctcggtaaacgaggcgatcgaccgcatgcgccactcggcgacgcgcgcgctg
ctcgaacgcgacgacgtcatcatcgtcgcgtcggtgtcgtgcctctacggcatcggctcg
gtcgaaacctattcggcgatgatcttcgacctcaagaagggccaggtcgccgacagccgc
gagatcatccgcaagctcgtcgcgctccagtacaagcgcaacgatcaggccttcgcgcgc
ggcaatttccgcgtgcgcggcgacagtctcgaaatcttcccctcgcactatgaggatatg
gcgtggcgcgtcagcttcttcggcgacgagatcgaggagattaccgaattcgacccgctc
accggcaagaagatcgcaaccctcaattacgtccgcgtctttgcgaacagccactatgtc
acccccggcccgacgctcaaacaagcgagcgaggcgatccgccacgagctcgccgagcgg
ctcaaagagctggaagccgaaggccggctgctcgaagcccagcggcttgagcagcgcacc
aatttcgacctcgaaatgatcgccgccacgggcagctgcgcggggatcgagaattacagc
cgcttcctcaccggtcgcctccccggcgagccgccgccgaccttgttcgaatatctcccc
gacaacgccctgctcttcgtcgatgaaagccaccagacgatcccgcagatcggcgcgatg
tcgaagggcgaccatcgccgcaagatcacgctcgccgaatatggcttccgcctgccgagc
tgcatcgacaaccggccgctgcgcttcgccgaatgggatatgatgcgcccgcaaacggtc
agcgtgtcggcaacccccgggacatgggagatggaccgcacgcagggtgtgttcgccgaa
caggtgatccgccccaccgggctgatcgacccgccggtcgagatcaagcccgtcgaggaa
caggtcgacgatttgatcgccgaggcgaagaaaaccgctgccgcaggctaccgcaccctc
gtcaccacgctgaccaagcgcatggccgaggatttgaccgaattcctgcacgaagccggg
ctcaaggtccgctacatgcattcggacgtcgaaacgctcgaacgcatcgagatcatccgt
gacttgaggctcggggtgttcgacgtgctcgtcggcatcaacctgctgcgcgaagggctc
gacattcccgaatgcgggctcgtcgcgatcctcgacgccgacaaggaagggtttctgcgc
agcgaaacgtcgctggtccagacgatcggccgtgccgcgcgcaacgtcgacggccgcgtc
attctctacgccgaccgcatcaccggcagcatggaacgcgcaatgcgcgaaaccgaccgc
cgccgcgaaaagcagaaggcatataacgaagcgcacggcatcaccccgacgacgatcaag
cgcaacatcggcgacatcatcgcgcatgtcgcgtcgaaggacggcgtgacgatcgacatc
ggcgacgacaagcccgcgcacatggtcgggcacaatctgcgcgcctatattgccgagctc
gaaaagaagatgcgcgacgcggcagcagacctggagttcgaggaagccggccgcctccgc
gacgaaatccgcaagctcgaggccgacgagctggggctccccccggatgagcaggttgca
ccgcgcgtcggccgctcgaacgaaggcaaaccggggacgcgcaaggggcgatttgggaaa
cagagcaagacgaagtgggggcgatga
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