Sphingopyxis sp. EG6: SPYCW_1392
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Entry
SPYCW_1392 CDS
T10392
Name
(GenBank) ribonuclease Z
KO
K00784
ribonuclease Z [EC:
3.1.26.11
]
Organism
speg Sphingopyxis sp. EG6
Brite
KEGG Orthology (KO) [BR:
speg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
speg03016
]
SPYCW_1392
Enzymes [BR:
speg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.11 tRNase Z
SPYCW_1392
Transfer RNA biogenesis [BR:
speg03016
]
Eukaryotic type
3'processing and CCA adding factors
3'processing factors
SPYCW_1392
Prokaryotic type
SPYCW_1392
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_2
Lactamase_B
Anti-Pycsar_Apyc1
Lactamase_B_4
Motif
Other DBs
NCBI-ProteinID:
BBB08376
LinkDB
All DBs
Position
1406920..1407996
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AA seq
358 aa
AA seq
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MTKGKRTALWVATILGIALLSAWLFQRPIGLWLFERAVERAAARDTLKDLPDGLHVGFCG
TGSPLPSRERAASCTVVIAGKALFVVDAGEGAARNIAQMGLPNGRIKAMFLTHFHSDHID
GMGPMMLLRWTASGNKSPLPVYGPSGVEQVIAGFNAAYALDNGYRTAHHGEAITPPAAAG
ATAIAFALPAAPTVIYDAGGLRVTAFAVDHRPVQPSVGYRFDYKGRSLVVSGDTAPSSTL
EVASKGADLLIHEALNPAMVNTLAAKLDKAGRNQTAQIMRDIIDYHASPAQAADSARVAG
VQMLVLSHVVPSMPSPYLNAAFLDGAEDRFDGPIIVGEDGQYFSLPAGSKTIDRGSWF
NT seq
1077 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaaggcaagcgtacagcgctctgggtggcgacgatccttggcatcgcgcttctg
tcggcgtggttgtttcagcggccgatcggcctttggctcttcgagcgcgcggtcgaacgc
gcggcggcgcgcgacacgctcaaggatctgccagacggattgcacgtcggtttctgcggc
accggctcccccctccccagccgcgagcgtgcggcgtcctgcaccgtcgtgatcgcgggc
aaggcgttgttcgtcgtcgatgcaggagagggtgcggcgcgcaatattgcacagatgggc
ctgcccaatggccgtatcaaggcgatgttcctgacccattttcattcggaccatatcgac
gggatggggccaatgatgctgctgcgctggaccgccagcggcaacaaaagtcctctgccc
gtttatgggccgtcgggtgtcgagcaggttattgccgggttcaacgccgcctacgcactc
gataatggctatcgcaccgcgcaccatggcgaggcgatcacgcctcccgcggctgccggc
gcgacggcgatcgcctttgcgctcccggcggcaccgacggtcatctacgacgcgggcggc
cttcgcgtcaccgctttcgccgtcgatcaccgcccggtccaaccgtcagtcggctatcgg
ttcgactataagggacgcagcctcgtcgtcagtggcgacacggcaccatcaagcacgctg
gaagtggcttccaaaggcgctgaccttctgattcacgaggcactgaaccccgcgatggtc
aacacgctcgcggcaaagctcgacaaggcgggccgcaaccagactgcacagatcatgcgc
gacatcatcgattatcatgccagcccggcgcaagccgccgacagcgcgcgcgtcgcaggg
gtccagatgctggtgctcagccacgtcgtgccgtcgatgccatcgccctacctgaatgcg
gcgttccttgacggcgccgaagatcggttcgacgggccgattatcgtcggcgaggacggc
caatacttctcgctgcccgctggcagcaagacaatcgaccgcggcagctggttctag
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