Sphingopyxis sp. EG6: SPYCW_1689
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Entry
SPYCW_1689 CDS
T10392
Name
(GenBank) exonuclease RNase T and DNA polymerase III
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
speg Sphingopyxis sp. EG6
Pathway
speg03030
DNA replication
speg03430
Mismatch repair
speg03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
speg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SPYCW_1689
03430 Mismatch repair
SPYCW_1689
03440 Homologous recombination
SPYCW_1689
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
speg03032
]
SPYCW_1689
03400 DNA repair and recombination proteins [BR:
speg03400
]
SPYCW_1689
Enzymes [BR:
speg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SPYCW_1689
DNA replication proteins [BR:
speg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
SPYCW_1689
DNA repair and recombination proteins [BR:
speg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
SPYCW_1689
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Motif
Other DBs
NCBI-ProteinID:
BBB08673
LinkDB
All DBs
Position
complement(1715019..1715936)
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AA seq
305 aa
AA seq
DB search
MQDEVPDPGALCVPNGDDDVRLLRRLDVREGETGVGGRVDTFIGVAVDCETTGIGDEDAI
IELALRRFRVDPAGVIVKIDRPYSWLEDPGCELPEDIVRLTGITNADLAGKSIDDGVALR
LLKSATFVCAHNASFDRRHVERRLPEAAGLAWCCSCNDIDWRANGFDGRSLGWLLAQSGY
FHGAHRAVDDVDAVIQILRQNMPDGTTALAQMLTTARAPSWRFRAVGASFEVKDLLRLRG
YRWDAASNPKCWWREVPDARRAEEEWWLASHVYSMEANPRALGPIIERLTWRERYAPTAP
SNRPP
NT seq
918 nt
NT seq
+upstream
nt +downstream
nt
atgcaggacgaggttcctgatccgggtgcgctgtgcgtgccgaacggcgatgacgatgtg
cgcctgctgcgccggctcgatgtccgcgagggcgagaccggcgtcggcggccgggtcgat
acctttatcggcgttgccgtcgactgcgagacaaccggcatcggtgatgaggacgcgatc
atcgaactcgcgttgcggcgattccgcgtcgaccccgctggcgtgatcgtcaagatcgac
cggccatactcgtggttagaggatccgggatgcgaactgcccgaggacattgtgcgccta
actggcattaccaacgccgacctggccggtaaatccatcgacgacggggtggccctgcga
cttctcaaatccgctacatttgtctgcgcgcacaatgcttccttcgatcgtcgtcatgta
gaacgccgactaccagaagctgcagggctcgcttggtgctgcagctgcaatgacatcgac
tggcgcgccaatggttttgacggccggtcgctggggtggcttctggcgcagagcggatac
ttccacggtgcgcaccgcgctgtggacgatgtcgacgcggtgatccaaattctacgacag
aacatgcctgatggcacgactgcgctcgcgcagatgctcaccaccgcccgcgcgcccagc
tggcgattccgcgcggtcggcgcctcctttgaggtgaaggacttgctgcgactgcggggc
taccgctgggacgctgcgagcaatccgaaatgctggtggcgagaagtgcccgacgcccgt
cgcgccgaggaggaatggtggcttgccagccatgtctactcgatggaggccaatccccga
gctcttggtccgataatcgagcggctgacgtggcgggaacgctacgcaccaacagcgcca
tccaaccgaccgccatga
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