Sphingopyxis sp. EG6: SPYCW_2494
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Entry
SPYCW_2494 CDS
T10392
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
speg Sphingopyxis sp. EG6
Pathway
speg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
speg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SPYCW_2494
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
speg03400
]
SPYCW_2494
Enzymes [BR:
speg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SPYCW_2494
DNA repair and recombination proteins [BR:
speg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SPYCW_2494
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
Cas3-like_C_2
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
BBB09478
UniProt:
A0A2Z5UEQ0
LinkDB
All DBs
Position
2568000..2571500
Genome browser
AA seq
1166 aa
AA seq
DB search
MPLLLADLARASDKRLVYVATDDAAMQAIADAAPFFAPDLIVHRFPAWDCLPYDRAGPSM
RVSADRLATLSALQQPARRGELLLTTVAAITQRTLTPFRIRQLATTLAAGQRIDRDALAE
LLISNGFSRVDTVADQGEFAVRGGILDLFPAGEETGLRVDFFGDEIESIRRFDPADQRSL
GPAKALQLLPAAETLLDQDTIRRFRSGYRDLFGAQATGDPLYQAVSDGRRQAGMDHWLPL
FEERLATLFDHIDPATQVLRGHRSDATAETRFAAIADYHANRVAAERESPGSYRPLAPET
LYLVESEWAGAAAQRPIHIVTPFDVPPGASIVDLETFAARDFTPERAADLNVYDKVADHL
SDERRKGRKTIIASYSEGARDRLSGLLREHGVSGLVQADTWQEALGSSSVRVERSRDTTK
DSATPPGVSTSLDTNGNMGAAKTGNVALIVLPLDHGFASDAISLLTEQDILGERLVRRQK
RRKSADAFLAELATLSVGDLVVHLDHGIGRYEGLTSIPVGSSPHDCVALTYAGGDKLYVP
VENLDVLSRYGGESDGVALDRLGGEAWQRRKARMKERIREIAGELLATAAQRALRSGEVL
AQDAAYPAFADRFPYQETDDQDRAIGDVLADMASGKPMDRLVCGDVGFGKTEVALRAAFV
AAMAGVQVAVVVPTTLLARQHFTNFVERFKGFPVNIGRLSRLVLAGEAQKTRDGLASGQV
DIVVGTHAVIAKSVEFKNLGLVIVDEEQRFGVVHKERLKQLKTDVHVLTLTATPIPRTLQ
MAMSGLRELSVIQTPPVDRLAVRTYVAPWDAVVLREALLREHDRGGQSFFVVPRIKDLPD
IEEFLRNRVPEIKYVVAHGQMTPTEVEDRMSAFYDRKYDVLLSTTIVESGLDIPSANTLI
IHRADRFGLAQLYQLRGRVGRGKTRAYAYLTTPEHGAITDTAEKRLKLLGDLDTLGAGFQ
LASHDLDIRGAGNLVGDEQSGHIREVGFELYQSMLEEAILVAKAEGAGKLPPREALSPVI
TVDAPILIPEDYVPDLPLRMALYRRLNDAGNRAALDAFAAEMIDRFGPLPPETANLVQLM
EIKANAKLAGIAKLDVGTKGALVSFHSDQFANVPGLIAYVERLKGRARIRPDNKLSVSGD
WMSTGARLNGALQLSKGLGKLARQAG
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
ttgccgctgctgctcgccgatctggcgcgcgccagcgacaaacggctggtctatgtcgcg
accgacgatgcggcgatgcaggcgatcgccgacgccgcgcccttcttcgcgcccgacttg
atcgtccaccgcttcccggcatgggattgcctgccctatgatcgcgccgggccgtcgatg
cgggtcagcgccgaccggctggcgacgctgtcggcgttgcagcagccggcgagacgcggc
gagctgctcctcaccaccgtcgctgcgatcacccagcgcacgctcaccccgttccgcatc
cgccagctcgcgaccaccttggcggcggggcaacggatcgaccgcgacgcgctcgccgaa
ctgctcatctcgaacggcttcagccgcgtcgataccgtcgctgatcagggcgaatttgcg
gtgcgcggcggcatcctcgacctgtttcccgcaggcgaggagaccggcctgcgcgtcgac
tttttcggcgacgagatcgaaagcatccgccgcttcgaccccgccgaccagcgcagcctg
ggtccggccaaggcgctgcaactgcttccagccgccgagacgttgctcgaccaggatacg
atcaggcgcttccgctcgggctaccgcgacctgttcggcgcgcaggcgaccggcgatccg
ctgtaccaggcggtcagcgacgggcggcggcaggcgggcatggaccattggctgccgctg
ttcgaagagcggctggcgacgctgttcgaccatatcgaccctgcgacccaggtgctgcgc
ggccaccgcagcgacgcgacggcggagacgcgctttgccgcgatcgccgattatcatgcg
aaccgcgtcgccgccgaacgcgaatcgccgggcagttatcggccgttggcgcccgagacg
ctgtatctggtcgagtccgaatgggccggggcggcggcgcagcgcccgatccacatcgtg
acgccgttcgacgttccgccgggcgctagcatcgtcgacctcgagacctttgccgcgcgc
gatttcacccccgaacgggccgccgacctcaatgtctatgacaaggtcgccgatcatctg
tcggacgagcgccgcaagggccgcaagacgatcatcgccagctattcggaaggggcgcgg
gatcgcctgtcagggctgttgcgcgagcatggcgtttcggggctggtgcaggccgatacc
tggcaggaggcgcttggttcgagttccgttcgtgtcgagcgaagtcgagacaccacgaag
gacagcgccaccccgccgggtgtctcgacttcgctcgacacgaacgggaatatgggggca
gccaagacaggcaatgtcgccctcatcgtgctccccctcgaccatggctttgcctccgac
gcgatcagcctgctgaccgaacaggatattctcggcgagcgcctcgtccgccgccagaag
cgccgcaagagcgccgatgccttcctcgccgaactcgcgacactcagcgtcggcgacctt
gtcgttcacctcgatcatggcatcgggcgctatgaagggctgacctcgatcccggtcggg
agcagcccgcacgattgcgtcgcgttgacctatgcgggcggcgacaagctctatgtcccg
gtcgaaaatctcgacgtcctctcgcgctatggcggcgagagcgacggggtcgcgctcgac
cggctgggcggcgaagcgtggcagcggcgcaaggcgcggatgaaggagcggatccgcgag
atcgcgggcgaattgctcgcgaccgcggcgcagcgcgcgctgcgttcgggcgaagtgctg
gcgcaggacgcggcctacccagccttcgccgaccgcttcccctatcaggaaaccgacgat
caggatcgcgcgatcggcgacgtgctcgccgacatggcgtcgggcaagccgatggaccgg
ctggtgtgcggcgacgtcggcttcggcaagaccgaggttgcgctccgcgccgcctttgtc
gccgcaatggcgggggtgcaggtcgcggttgtcgtgccgaccaccctgcttgcgcgtcag
catttcacgaacttcgtcgagcgtttcaaaggtttcccggtcaacatcgggcggctgtcg
cgcctcgtcctcgcgggcgaagcgcaaaagacgcgcgacggcctggccagcggtcaggtc
gacatcgttgtcggcacccatgcggtgatcgccaaatcggtcgagttcaagaacctcggc
ctcgtcatcgtcgacgaggaacaaaggttcggcgtcgtccacaaggagcggctgaagcag
ctcaagaccgacgtccatgtcctgacgctcaccgctaccccgattccgcgcaccttgcag
atggcgatgtcggggctgcgcgagctcagcgtgatccagacgccgccggtcgatcgcctc
gcggtgcgcacttatgtggcgccgtgggatgcggtggtgctgcgcgaagccctgctgcgc
gagcatgatcgcggcgggcagagcttctttgtcgtcccgcggatcaaggatctgcccgat
atcgaggaatttttgcgcaaccgcgtccccgaaatcaaatatgtcgtcgcgcatggtcag
atgaccccgaccgaggtcgaggatcggatgagcgccttttacgaccgcaaatatgacgtg
ctgctgtcgacgacgatcgtcgaaagcggcctcgacatcccgagcgccaacacgctgatc
atccaccgcgccgaccgtttcggcctcgcccagctgtaccagctgcgtggccgcgtcggg
cgcggcaagacgcgcgcctatgcctatctcaccacccccgaacatggcgcgatcaccgac
accgccgaaaaaaggctgaagctgctcggcgatctcgatacgctgggcgccgggttccag
ctcgcgagccacgatctcgacattcgcggcgcgggcaatctggttggcgacgagcagtct
gggcatatccgcgaggtcgggttcgaactctatcaatcgatgctggaagaagcgatcctg
gtcgccaaggccgaaggcgcgggcaagctgccgccgcgcgaggcgctgtcgcccgtcatc
accgtcgacgcgccgatcctgatcccggaagattatgtccccgacctgccgctgcgcatg
gcgctctatcgccgcctcaacgacgccgggaaccgcgccgcgctcgacgccttcgccgcc
gaaatgatcgaccgcttcgggccgctgccgcccgaaaccgcgaacctggtccagctgatg
gagatcaaggccaatgccaagctggcggggatcgccaagctcgacgtcgggaccaagggc
gcgctcgtcagcttccacagcgaccagtttgccaacgtccccgggctgatcgcctatgtc
gaacggttgaaaggccgcgcgcgtattcgccccgacaacaagctgtcggtcagtggcgac
tggatgagcaccggggcgcgattgaacggtgcgctgcaattgtcgaaggggttggggaaa
ttggcacggcaggcgggctag
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