Sphingopyxis sp. EG6: SPYCW_2601
Help
Entry
SPYCW_2601 CDS
T10392
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
speg Sphingopyxis sp. EG6
Pathway
speg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
speg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SPYCW_2601
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
speg03019
]
SPYCW_2601
03009 Ribosome biogenesis [BR:
speg03009
]
SPYCW_2601
Enzymes [BR:
speg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SPYCW_2601
Messenger RNA biogenesis [BR:
speg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SPYCW_2601
Ribosome biogenesis [BR:
speg03009
]
Prokaryotic type
rRNA helicases
SPYCW_2601
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_22
CMS1
Motif
Other DBs
NCBI-ProteinID:
BBB09585
UniProt:
A0A2Z5UEW5
LinkDB
All DBs
Position
2681203..2683062
Genome browser
AA seq
619 aa
AA seq
DB search
MTFETLSPVLSDALVARGYEALTPVQTHVTESEAKGRDLLVSAQTGSGKTVAFGLAMADE
LLEDGRLPFATSPLALIIAPTRELAMQVSRELGWLYGKAGARIATCVGGMDASKERRALG
QGVQIVVGTPGRLRDHLERGALDLTALRVAVLDEADEMLDMGFRDDLEEILDGTPETRRT
LLFSATLPKPIVQLAKRYQRDALRISTVGEDRGHGDIAYQAVTVAPADIEGAVINLLRLH
EAETAMLFCATRDNVRRLHASLVERGFAAVALSGEHSQNERNHALQALRDRRARVCVATD
VAARGIDLPTLSLVIHVEIPRDAEALQHRSGRTGRAGKKGTAVIIVPYPRRRRVDGMLRG
ARIEAEWMDAPTAADVRARDQERLMEKLLTPQEHEPEDLELAQRLMAERSAEDIAASLVR
SHRALMPPPEDLIDNGPRGRDRPERGERFERSDRGSADRREGFEDSVWFRLNIGRHQNAD
PRWILPLLCRRGHVSKNEIGAIRIGPKETMFNIPRGIADRFAEAVVRSANADGEDDSGVS
ITPAPDGPTYPPRRDKGGHGGGHSGDRAPRATLGRAPGGDRSFGDRAGPRGPRGPGGPGG
NERYKPKPFGQRSPRRPSK
NT seq
1860 nt
NT seq
+upstream
nt +downstream
nt
atgactttcgaaactctttcgcccgtcctttcggacgccctcgtcgcgcgcggctatgaa
gcgctgacccccgtccagacccatgtcaccgaatccgaagcgaagggccgcgacctgctc
gtttcggcgcagaccggatcgggcaagaccgtcgctttcggtctcgcgatggccgacgag
ttgctcgaggacggacgcctgcccttcgcaacctcgccgctggcgctgatcatcgcgccg
acgcgcgaactcgcgatgcaggtcagccgcgagctcggctggctttacggcaaggcaggt
gcgcgcatcgcgacctgcgttggcggcatggacgccagcaaggaacgccgcgcgctgggt
cagggcgtgcagatcgtcgtcggcacccccgggcgcctgcgcgatcaccttgaacgcggc
gcgctcgacctcaccgcgctgcgcgtcgcggtgctcgacgaggccgacgaaatgctcgac
atgggctttcgcgacgatctggaggaaatcctcgacggcacccccgaaacgcgccggacg
ctgctgttttcggcgacgctgcccaaaccgatcgtccagctcgccaagcgctatcagcgc
gacgcgctgcgcatctcgaccgtcggcgaagatcgcggccatggcgacatcgcctatcag
gcggtgaccgtcgccccggccgacatcgagggcgcagtgatcaacctgctccgcctgcac
gaggccgaaaccgcgatgctgttctgcgcgacgcgcgacaatgtccgccgcctccacgcc
agcctggtcgaacgcggtttcgctgccgtcgccttgtcgggcgagcatagccagaacgaa
cgcaaccacgcattgcaggcgctgcgtgaccgcagggcaagagtatgcgtcgccaccgac
gtggcggcgcgcggtatcgatcttccgaccctcagcctagtcatccatgtcgaaatcccc
cgcgatgccgaagcacttcagcaccgttcgggccgcaccggccgggcgggcaaaaagggg
acggcggtcatcatcgtcccctatccccgccgccgccgcgtcgacggcatgctgcgcggc
gctcggatcgaggccgaatggatggacgcgccgaccgccgccgatgtgcgcgcgcgcgac
caggaacggttgatggaaaagctgctcacgccgcaggagcatgaacccgaggatctggaa
ctcgcgcagcggttgatggccgagcgcagcgcagaagacatcgccgcatcgctggtccgc
tcgcaccgcgcactgatgccgccgcccgaggatctgatcgacaacggcccgcgcggtcgt
gatcgtcccgaacgcggcgagcgtttcgaacgctcggaccgtggcagcgcagaccgccgc
gaagggtttgaggacagcgtctggttccgcctgaacatcgggcgccatcaaaacgccgac
ccgcgctggattctgccgctgctgtgccgccgcggccatgtcagcaagaacgagatcggc
gcgatccggatcgggccgaaggaaacgatgttcaacatcccgcgcggcatcgccgatcgc
tttgccgaggcggtggtgcgcagcgccaacgccgatggcgaggacgacagcggcgtgtcg
atcaccccggcgcccgacggcccgacctatccgccgcgccgcgataaaggcggacatggg
ggcggccattcgggcgaccgcgcgccgcgcgccaccttgggccgcgcgcctggcggcgac
cgcagcttcggcgaccgcgccggcccgcgcggcccgcgtggtcccggcggcccgggcggc
aacgaacgctataagcccaagcccttcggccagcgcagcccgcgccgtccgtcgaaatag
DBGET
integrated database retrieval system
