Sphingopyxis sp. EG6: SPYCW_2642
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Entry
SPYCW_2642 CDS
T10392
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
speg Sphingopyxis sp. EG6
Pathway
speg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
speg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SPYCW_2642
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
speg03019
]
SPYCW_2642
03016 Transfer RNA biogenesis [BR:
speg03016
]
SPYCW_2642
Enzymes [BR:
speg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
SPYCW_2642
Messenger RNA biogenesis [BR:
speg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
SPYCW_2642
Transfer RNA biogenesis [BR:
speg03016
]
Prokaryotic type
tRNA degradation factors
SPYCW_2642
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
S1_RRP5
OB_RRP5_4th
BioW
KH-I_KHDC4-BBP
DUF3016
Motif
Other DBs
NCBI-ProteinID:
BBB09626
UniProt:
A0A2Z5UEI8
LinkDB
All DBs
Position
complement(2723158..2725461)
Genome browser
AA seq
767 aa
AA seq
DB search
MFDVKKVSIEWGGETLTLETGKVARQADGAVMATLGETVVLCAVTAAKSVKDGQDFFPLT
VHYQEKYSAAGRIPGGFFKRERGATEKETLVSRLIDRPIRPLFPEGFYNEINAIAQVLSY
DGHNEPDILAMVAASAALTISGVPFMGPIGAARVGYVDGEYILNPTDAQVAEGDLDLVVA
ATYDAVMMVESEANELSEEIMLGAVLFAHDACKEVVKAIIKLAEQAAKDPWEVAAGDDNA
AIKDKLKKLIGKDIAAAYKLTDKSARSNALNEARAKAKESFTADGLSPQDVMAGIKLTKK
LEAEIVRGAILKDGKRIDGRTTTQIRPIVAETHFLPRAHGSALFTRGETQTIATATLGTK
DAEQMIDGLNGLSYQNFMLHYNFPPYSVGEVGRFGAPGRREVGHGKLAWRALHPVLPTKD
EFPYTIRLTSDITESNGSSSMASVCGGSLAMMDAGVPIKRPVSGIAMGLILEGKDYAILS
DILGDEDHLGDMDFKVAGTSEGITTMQMDIKIAGITREIFEAALNQAKEGRAHILGEMNK
ALGETRSELSAHAPRIETMQIDKSKIRDVIGTGGKVIREIVATTGAKVDIDDEGLIKISS
SDLDQIEAARKWISGIVEEAEVGKIYDGKVVNLVDFGAFVNFMGGKDGLVHVSEIANERV
EKVSDVLSEGQEVKVKVLEIDQRGKVRLSMRVVDQETGAELEDTRPPREPRGDRGPRGDR
GDRGPRRDGGGRGDRGPRRDGDRDRGPRRERNDGPEDQGHVPDFLKD
NT seq
2304 nt
NT seq
+upstream
nt +downstream
nt
atgtttgacgtgaaaaaagtatcgatcgagtggggcggtgaaacgctgacgctcgaaacg
ggcaaggttgcccgccaggccgacggcgccgtgatggcgacgctgggcgaaacggtcgtc
ctgtgcgccgtgaccgccgcgaagtcggtgaaggacgggcaggacttcttcccgctcacc
gtccattatcaggaaaaatattcggccgcgggtcgcatccccggcggcttcttcaagcgc
gaacgcggtgcgaccgaaaaggaaactttggtcagccgcctgatcgaccgtccgatccgt
ccgctgttccccgaaggtttctataacgaaatcaacgccattgcccaggttctgagctat
gacggccacaacgagcccgacatccttgcgatggtcgcggcgtcggccgcgctcaccatt
tcgggcgtgcccttcatgggcccgatcggcgccgcgcgcgtcggctatgtcgacggcgaa
tatatcctcaacccgaccgacgcgcaggttgccgaaggcgacctcgacctcgtcgtcgct
gcgacctacgacgcggtgatgatggtcgaatccgaagcgaacgagctgtcggaagaaatc
atgctcggcgcggtcctgttcgcgcacgatgcctgtaaggaagtcgtcaaggcgatcatc
aagctcgccgaacaggccgccaaggatccgtgggaagtcgccgccggcgacgacaatgcc
gcgatcaaggacaagctcaagaagctgatcggcaaggatatcgcggcggcttacaagctg
accgacaagtcggcgcgttcgaatgccttgaacgaagcgcgcgcgaaggcgaaggaaagc
ttcacggccgacggcctcagcccgcaggacgtcatggcgggcatcaagctcaccaagaag
ctcgaagccgaaatcgtgcgcggcgccatcctcaaggacggcaagcgcatcgacggccgc
acgacgacgcagatccgcccgatcgtcgccgaaacgcacttcctgccgcgcgcgcatggt
tcggcgctgttcacccgcggcgaaacccagacgattgctacggctactctgggcaccaag
gatgcggagcagatgatcgacggcctcaacggcctgtcgtaccagaacttcatgctgcac
tataacttcccgccctattcggtcggtgaagtcggccgcttcggcgccccggggcgccgc
gaagtcggtcacggcaagctcgcatggcgcgcgctgcaccccgtgctgccgaccaaggac
gagttcccctacacgatccgcctcaccagcgacatcactgagtcgaacggctcgtcgtcg
atggcgtcggtctgtggtggttcgctcgcgatgatggacgccggcgtgccgatcaagcgc
cccgtgtcgggcatcgcgatgggcctgatcctcgaaggcaaggattatgcgatcctcagc
gacatcctcggcgacgaggatcacctcggcgacatggacttcaaggtcgcgggcacatcc
gaaggcatcaccacgatgcagatggacatcaagatcgcgggtatcacgcgcgagatcttc
gaagccgcgctcaaccaggccaaggaaggccgcgcgcacatccttggcgagatgaacaag
gcgctcggcgagacccgcagcgaattgtcggcgcacgcaccgcgtatcgaaacgatgcag
atcgacaagtcgaagatccgcgatgtcatcgggaccggcggcaaggtgatccgcgagatc
gtcgcgaccaccggcgccaaggtcgacatcgacgacgaaggcctgatcaagatctcgtcg
agcgacctcgaccagatcgaagccgcgcgcaagtggatcagcggcatcgtcgaggaagcc
gaagtcggcaaaatctatgacggcaaggtcgtcaacctggtcgatttcggtgcgttcgtg
aatttcatgggcggcaaggacggtctcgtccacgtcagcgaaatcgcgaacgagcgcgtc
gagaaggtctcggacgtcctcagcgaaggccaggaagtcaaggtcaaggtgctcgagatc
gaccagcgcggcaaggttcgcctgtcgatgcgcgttgtcgatcaggaaaccggcgccgag
ctggaagacacccgcccgccgcgcgaaccgcgcggggaccgtggtccgcgcggtgaccgc
ggcgatcgtggcccgcgccgcgatggcggcggtcgtggcgaccgtggtccgcgccgcgac
ggcgaccgcgatcgcggcccgcgccgcgaacgcaacgacggcccggaagatcagggccat
gtgcctgatttcctgaaggactaa
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