Sphingopyxis sp. EG6: SPYCW_2689
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Entry
SPYCW_2689 CDS
T10392
Name
(GenBank) diaminopimelate decarboxylase
KO
K01586
diaminopimelate decarboxylase [EC:
4.1.1.20
]
Organism
speg Sphingopyxis sp. EG6
Pathway
speg00300
Lysine biosynthesis
speg00470
D-Amino acid metabolism
speg01100
Metabolic pathways
speg01110
Biosynthesis of secondary metabolites
speg01120
Microbial metabolism in diverse environments
speg01230
Biosynthesis of amino acids
Module
speg_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
speg00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
SPYCW_2689
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
SPYCW_2689
Enzymes [BR:
speg01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.1 Carboxy-lyases
4.1.1.20 diaminopimelate decarboxylase
SPYCW_2689
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GFIT
Motif
Pfam:
Orn_Arg_deC_N
Orn_DAP_Arg_deC
Ala_racemase_N
Motif
Other DBs
NCBI-ProteinID:
BBB09673
UniProt:
A0A2Z5UFE7
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Position
complement(2769759..2771018)
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AA seq
419 aa
AA seq
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MDQFALRDGVLHAEDIPLPRLAEEIGTPVYVYSRAMLEAHAQEFRDALKDVPKKHLAFAI
KSNPNLGVLRVLARQGYGADVVSGGELERAIAAGMAPDDIVFSGVGKTRAELALGLDRGI
GQFNIEHEAEGVALAEIALKKEMTARAVLRVNPDVDAGTHAKISTGKADNKFGVGIDVAP
AMFDRLAALPGLQMRGIAVHIGSQLTSLDPLEAAFERLGRLIADLRAAGHSITHVDLGGG
LGVSYKPEDNPPSMADYGAMVARVTRDWDVTLMFEPGRVIAGNTGVLLTEVLWVKPGATN
PFVIVDAAMNDLARPALYDAYHDFVAVKPTGAKMTASIVGPVCETGDTFARDRVTDAVEP
GDLAVFRTAGAYGATMASTYNSRSLVPEVLVDGDRYVKVADRIAASTIMAAERVPDWID
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atggatcaatttgcccttcgtgacggcgtcctccacgccgaagatattccgctgccgcgc
cttgccgaagaaatcggcacccccgtttatgtctattcgcgcgcgatgctcgaagcgcat
gcgcaggaattccgcgatgcgctgaaggacgtgccaaagaagcacctcgcctttgcgatc
aagagcaaccccaaccttggcgtactgcgcgtgctggcgcggcagggttatggcgccgac
gtcgtctcgggcggcgagctcgaacgcgcgattgccgcgggcatggcgcccgacgacatc
gtcttttcaggcgtgggcaagacccgcgccgagctcgcgttgggcctcgatcgcggcatc
ggccagttcaacatcgaacatgaggcggaaggcgtcgcgctcgccgaaatcgcgctcaag
aaggaaatgaccgcgcgcgccgtgctgcgcgtcaatcccgacgtcgatgcgggcacccat
gcgaagatttcgaccggcaaggccgacaacaagttcggcgtcggtatcgacgtcgccccc
gcgatgttcgaccgcctcgccgcgcttcccggcctccagatgcgcggcatcgcggtccat
atcggcagccagctgaccagcctcgacccgctcgaggccgcgttcgagcggctcggtcgc
ctgatcgccgacctgcgcgccgcgggacacagcatcacccatgtcgatctcggcggcggg
ctcggcgtgtcgtacaagcccgaggataatccgcccagcatggccgattatggcgcgatg
gtcgcgcgcgtgacccgggactgggacgtcaccttgatgttcgagcccggccgcgtcatc
gcgggcaacaccggggtgctgctgaccgaagttctctgggtcaagcccggcgcgaccaac
ccctttgtcatcgtcgacgcagcgatgaacgacctcgcgcgccccgcgctctacgatgcc
tatcatgatttcgtcgcggtgaagccgaccggcgccaagatgaccgcctcgatcgtcggc
ccggtgtgcgaaaccggcgacaccttcgcgcgcgaccgcgtgaccgatgcggtcgaaccc
ggcgacctcgcggtgttccgcactgcgggcgcctatggcgcgacgatggcttcgacctac
aacagccgcagcctggtccccgaagtgctggtcgatggcgatcgctacgtcaaagtcgcc
gaccgcatcgccgccagcacgatcatggcggcggaacgcgtgccggactggatcgattga
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