Sphingopyxis sp. EG6: SPYCW_2954
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Entry
SPYCW_2954 CDS
T10392
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
speg Sphingopyxis sp. EG6
Pathway
speg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
speg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SPYCW_2954
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
speg03019
]
SPYCW_2954
03400 DNA repair and recombination proteins [BR:
speg03400
]
SPYCW_2954
Enzymes [BR:
speg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SPYCW_2954
Messenger RNA biogenesis [BR:
speg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SPYCW_2954
DNA repair and recombination proteins [BR:
speg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
SPYCW_2954
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HRDC
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
HHH
Motif
Other DBs
NCBI-ProteinID:
BBB09938
UniProt:
A0A2Z5UFY2
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All DBs
Position
complement(3035363..3037138)
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AA seq
591 aa
AA seq
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MSADALLPLLKSTFGFDAFRGRQADVVTRVMAGERTLAVMPTGAGKSLTYQLPAVALDGC
VVVVSPLIALMHDQLRGARAAGIRAASLTSVDADGAETRQRYRDGELDLLYVAPERATGE
GFRSLLEARTPALFAIDEAHCVSEWGHDFRPDYRLLRPLLDAFPAVPRLALTATADKHTR
EDILVQLGIPDDGLILAGFDRPNIRYAIRPRITPARQLVEFIAANPGPGIVYCPTRSGTE
RLAEQLAKATGRPVAAYHAGLDAEVRARVQHDFVASEDGIVTATVAFGMGIDKPDVRFVA
HAALPKSIESYYQETGRAGRDGDPAEAMMLWGADDFAKARMRLSELPEARVPGERVRLNA
LAALVETVECRRAQLLRHFGESPPPRCGNCDNCLDPAAQIDATVLAQKLLSAVYRTGQSY
GAGHIEAVLTGRSDERIAQRGHDKLSVFGIVEGDEARLIKPLVRTLVAREALETTEHGGL
MLGPTARAMMKGEAAVLIAEPPVKRTRREARGGAGAANPIGDPLFDALRATRRELAAEAN
VPPYVIFHDAVLRAMATERPATLEAMGTIPGVGAKKLEAWGDAFLAVIRQF
NT seq
1776 nt
NT seq
+upstream
nt +downstream
nt
atgtccgccgacgcgcttctccccctcctgaaatccaccttcggtttcgacgcctttcgc
ggtcggcaggccgacgtcgtcacccgcgtgatggcgggcgagcggacgctggcggtgatg
ccgaccggcgcgggcaagtcgctgacataccagctgcccgcggtcgcgctcgatggctgc
gtcgtcgtcgtgtcaccgctgatcgcgctgatgcacgaccagctgcgcggcgcgcgcgcg
gcggggattcgcgcggcgagcctgaccagcgtcgatgccgatggcgccgagacgcggcag
cggtaccgcgacggcgagctcgacttgctttatgtggcgcccgaacgcgcgacgggcgag
gggtttcgctcgctgcttgaggcacgcaccccggcgctgttcgcgatcgacgaggcgcat
tgcgtgtccgaatgggggcatgatttccgccccgactaccgcttgctgcgcccgttgctc
gatgcgtttccggcggtaccgcggctggcgctgaccgccaccgccgacaagcatacgcgc
gaggacatattggttcagctcgggattcccgacgacgggctgatcctcgcgggcttcgac
cggccgaatatccgttatgcgatccgcccgcggatcaccccggcgcgccagctggtcgaa
ttcattgccgccaaccccgggccggggatcgtctattgcccgacgcgcagcggcaccgag
cggctggcagaacaattggcgaaggcgaccgggcggccggtcgccgcctatcacgccggg
ctcgatgccgaggtgcgcgcgcgggtccagcatgattttgtcgcgtcggaggacggtatc
gtcaccgcgacggtcgcgttcggcatgggcatcgacaagcccgatgtgcgctttgtcgca
cacgccgcgctgcccaaatcgatcgaaagctattatcaggaaaccggccgcgccggccgc
gacggcgaccccgccgaggcgatgatgctgtggggtgccgacgatttcgccaaggccaga
atgcggctgtccgaattgcccgaggcgcgggtgccgggcgagcgggtgcggctcaacgcg
ctggcggcgctggtcgaaacggtcgaatgccgccgcgcgcaattgctgcgtcatttcggc
gaaagcccgccgccgcgttgcggcaattgcgacaattgcctcgaccccgcggcgcagatc
gacgcgacggtgctggcgcaaaaactgctcagcgcggtctatcgcaccgggcaaagctat
ggcgccgggcatatcgaggcggtgctgaccgggcgcagcgacgagcggatcgcccagcgt
ggccatgacaaattgtcggtgttcggcatcgtcgaaggcgacgaggcgcggttgatcaag
ccgctggtgcggaccttggtggcgcgcgaggcgctggagacgaccgagcatggcgggctg
atgctcggccccaccgcgcgcgcgatgatgaagggcgaagcggcggtgctgatcgccgag
ccgccggtgaagcgtacgcggcgggaagcgcgcggtggcgcgggtgccgccaacccgatc
ggcgatccgctgttcgacgcgctgcgcgccacgcggcgcgagctggctgccgaagcgaat
gtgccgccctatgtgatctttcacgacgcggtgctgcgcgcgatggcgaccgagcggccc
gcgacactggaagcgatgggcacgatcccgggggtcggcgccaagaaactcgaggcgtgg
ggcgatgcgtttctggcggtgatccggcagttctga
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