Sphingopyxis sp. EG6: SPYCW_3000
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Entry
SPYCW_3000 CDS
T10392
Name
(GenBank) thiamine biosynthesis protein ThiC
KO
K03147
phosphomethylpyrimidine synthase [EC:
4.1.99.17
]
Organism
speg Sphingopyxis sp. EG6
Pathway
speg00730
Thiamine metabolism
speg01100
Metabolic pathways
speg01240
Biosynthesis of cofactors
Brite
KEGG Orthology (KO) [BR:
speg00001
]
09100 Metabolism
09108 Metabolism of cofactors and vitamins
00730 Thiamine metabolism
SPYCW_3000
Enzymes [BR:
speg01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.17 phosphomethylpyrimidine synthase
SPYCW_3000
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ThiC_Rad_SAM
ThiC-associated
Motif
Other DBs
NCBI-ProteinID:
BBB09984
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Position
3075081..3076973
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AA seq
630 aa
AA seq
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MADIDSRLDKTQAQPIGVTTGPIRGSRKIHVATQTGSGIRVAMREILLEPSSGGPPVRVY
DTSGPYTDADAVIDIAKGLPELRRDWIRGRGDVEEVTQREVRPEDNGQLGPDRSGGVPAF
PNVRRNVLRAKPGANVSQMHYARRGIITPEMEYVAERENLGRARLAEYRRDGESFGASIP
DYVTPEFVRDEVARGRAIIPSNINHPESEPMAIGRNFLVKINANIGNSAVASDVASEVDK
MVWSIRWGADTVMDLSTGRNIHDTREWIIRNSPVPIGTVPIYQALEKVGGIAEDLTWEIF
ADTLIEQAEQGVDYFTIHAGVRLPYVPLAAKRMTGIVSRGGSIMAKWCLAHHKESFLYER
FDEITEIMKAYDVAYSLGDGLRPGSIYDANDEAQFAELYTLGELTKRAWAQDVQVMIEGP
GHVPMHKIKENMEKQLEACGEAPFYTLGPLTTDIAPGYDHITSGIGAAQIGWYGTAMLCY
VTPKEHLGLPDRDDVKVGVVTYKLAAHAADLAKGHPAAQVRDDALSKARFEFRWRDQFNL
SLDPDTAEQYHDQTLPAEGAKTAHFCSMCGPKFCSMKISQEVREFAKLQNQDSAGFIAAE
EAEKGMAEMSQVYEETGRELYMGAGGREHD
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
atggccgacatcgacagccgcctcgacaagacgcaagcccagcccatcggcgtcaccacc
ggacccataagaggcagccgcaagatccatgtcgcgacccagaccggcagcggcatccgc
gtcgcgatgcgcgagattctgctcgaaccctcgtcgggcgggcccccggtgcgcgtctac
gacaccagcgggccgtacaccgacgccgacgcggtcatcgacatcgccaagggcctcccc
gaactccgccgcgactggatccgcggccgcggcgacgtcgaagaagtcacccagcgcgag
gttcgccccgaggataacggccagctcggccccgaccgcagcggcggcgtccccgccttc
cccaacgtccgccgcaacgttctccgcgccaagcccggcgcgaacgtcagccagatgcac
tacgcccgccgcggcatcatcacccccgagatggaatatgtcgccgagcgcgagaacctc
ggccgcgcccgcctcgccgaataccgccgcgacggcgaaagcttcggcgccagcatcccc
gattatgtcacccccgaattcgtccgtgatgaggtcgcgcgcggccgcgccatcatcccc
agcaacatcaaccaccccgaaagcgagccgatggcgatcggccgcaacttcctcgtcaag
atcaacgccaatatcggcaacagcgcggtcgcatccgacgtcgcatccgaagtcgacaag
atggtctggtcgatccgctggggcgccgacaccgtcatggacctgtcgaccgggcgcaac
atccacgacacgcgcgaatggatcatccgcaattcgcccgtcccgatcggcaccgtcccc
atctaccaggcgctcgagaaggtcggcggcatcgccgaggacctgacctgggaaatcttc
gccgacacgctgatcgaacaggccgaacagggcgtcgactatttcaccatccatgccggc
gtccgcctcccctacgtccccctcgcggccaagcgcatgaccggcatcgtgtcgcgcggc
ggcagcatcatggcgaaatggtgcctcgcgcatcacaaggaaagcttcctctacgaacgc
ttcgacgagattaccgagatcatgaaggcctatgacgtcgcctacagcctcggcgacggc
ctccgccccggcagcatctatgacgcgaacgacgaggcgcagttcgccgagctctacacg
ctgggcgagctcaccaagcgcgcctgggcgcaggatgtccaggtgatgatcgaggggccg
ggtcacgtcccgatgcacaagatcaaggagaatatggaaaagcagctggaggcgtgcggc
gaggcgcccttctacacattggggccgctaaccaccgacatcgcgccgggctatgaccat
atcaccagcggcatcggcgccgcgcagatcggctggtacggcacggcgatgctttgctac
gtcacgcccaaggagcatctgggcctgcccgaccgcgatgatgtgaaggtcggcgtcgtc
acctacaagctcgccgcccacgccgccgacctcgccaagggccaccccgccgcgcaggtc
cgcgacgacgcgctatcgaaagcgcgcttcgaattccgctggcgcgaccagttcaacctg
tcgctcgaccccgacacggcggagcaatatcacgaccagaccttgcccgcggaaggcgcc
aagaccgcgcatttctgcagcatgtgcggccccaaattctgctcgatgaagatcagtcag
gaggtgcgggagttcgcgaagctgcagaatcaggacagcgcgggcttcatcgcggcggaa
gaggccgagaagggaatggccgaaatgagccaggtctatgaggagaccggccgcgagctg
tatatgggcgcgggtgggcgggagcatgattga
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