Sphingopyxis sp. EG6: SPYCW_3707
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Entry
SPYCW_3707 CDS
T10392
Name
(GenBank) ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
speg Sphingopyxis sp. EG6
Pathway
speg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
speg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SPYCW_3707
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
speg03019
]
SPYCW_3707
03009 Ribosome biogenesis [BR:
speg03009
]
SPYCW_3707
Enzymes [BR:
speg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
SPYCW_3707
Messenger RNA biogenesis [BR:
speg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SPYCW_3707
Ribosome biogenesis [BR:
speg03009
]
Prokaryotic type
rRNA processing factors
SPYCW_3707
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
BBB10691
LinkDB
All DBs
Position
complement(3828234..3830882)
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AA seq
882 aa
AA seq
DB search
MTTRMLIDARHREETRVAVTKGNRIEEFDFESAEHKQLKGNIYLAKVTRVEPSLQAAFVE
YGGNRHGFLAFSEIHPDYYQIPKEDRDALLREEAEHAAAAAQRAEDDLDELEGDVADVEY
HDDENGDAPAPETIGEGADDDSDDGAENGDGEEGDEGGDAADDTEGKDGRGDRKRRGRDG
RKGGRGRGRGRRNDDEEGESRMSLRRRYKIQDVIRRRQVMLVQVVKEERGNKGAALTTYL
SLAGRYCVLMPNTMHGGGISRKISNGADRRKLKAMIDELNLPPTMGCIVRTAGMSRTKVE
IKRDFDYLARLWDEIREKTLASSAPALVHSDSDLVKRAIRDIYHKDIEEVLVEGDEGYKA
AKQFMKLLMPSHARRVKQYADPVSLYQRYGVEDQLAGMLNPVVQLKSGGYLVINPTEALV
SIDINSGRSTREHNIEQTALNTNLEAAHEIARQLRLRDMAGLVVIDFIDMDHGSNVRKVE
RAMKDALKNDRARIQVGRISGFGLMEMSRQRLRTGVLEASTRPCPHCEGTGLVRTASSAG
LSALRLIEEEAARGKGSRITLRASQEATFYLLNEKRRELRDIEELYGVTVEILPDGETEG
ARMAVEVSGPPPVARRSFAPIAPIEDDDDDIPEDEDDEAEDEAADERPARSRDRKEGEGD
GEGRKRRRRRRRGRRGRRDEEGNEIADGSDDGEARDGDAEGEDNGEAESESDAAPAEATA
ETDADTADAKPRRRRGGRGRKKADAVDATDEAAVADEPAAPVEAEVTEPVAEEAPAAEEK
PKRKRAPRKTKAAAAAEAAEAAEAAPEAVEPEPVAETETEAEPAKPAPKKRASRAKKAVA
AEAAPEAAATREAEPVAADAEDNGVGPDGEPRRGWWQRTFGN
NT seq
2649 nt
NT seq
+upstream
nt +downstream
nt
atgaccacgcgcatgttgatcgacgcgcggcaccgggaagaaacccgggtcgccgtcacc
aagggaaaccgcatcgaggagtttgatttcgagtccgccgagcacaagcagctcaagggc
aatatctatctggccaaggtaacccgtgtcgaaccgtcgctgcaggcggcgttcgtcgaa
tatggcggcaatcgccacggcttccttgccttcagcgaaatccaccccgattattaccag
attccgaaggaagaccgcgacgcgctgctgcgcgaagaggccgaacatgccgccgccgcc
gcgcagcgcgccgaggacgacctcgatgagctggaaggcgatgttgccgacgtcgaatat
catgacgacgaaaatggcgacgcccccgcgccggaaaccatcggcgaaggggccgatgac
gatagcgacgacggcgcggaaaatggcgacggcgaagagggcgacgaaggcggcgatgcc
gcagacgacaccgagggcaaggatggccgcggcgaccgcaagcgccgtgggcgcgacggg
cgcaagggcggtcgcggccgcgggcgtggccgccgcaacgacgacgaggaaggcgaaagc
cggatgtcgctgcgccgccgctacaagatccaggacgtcatccgtcgccgtcaggtgatg
ctggtgcaggtcgtcaaggaagaacgcggcaacaagggcgccgcgctcaccacctatttg
tcgctcgccggccgctattgcgtgctgatgccgaacacgatgcacggcggcgggatcagc
cgcaagatttcgaacggcgccgatcgccgcaagctgaaggcgatgatcgacgagctcaac
ctgccgccgacgatgggctgcatcgtccgcaccgccgggatgagccgcaccaaggtcgag
atcaagcgcgactttgattatctcgcccgcctgtgggacgaaattcgcgaaaagacgctg
gcatcgagcgcgcccgcgctggtccattcggacagcgacctcgtcaagcgcgcgatccgc
gacatctatcacaaggacatcgaggaagtgctcgtcgaaggcgacgagggctataaggcc
gccaagcagttcatgaagctgctgatgccgagccacgcccggcgcgtgaaacaatatgcc
gatccggtgtcgctctatcagcgttacggcgtcgaggatcagctcgcggggatgctcaat
cccgtcgtgcagctgaaatccggcggttacctggtgatcaacccgaccgaggcgctggtg
tcgatcgacatcaactcgggccggtcgacgcgcgagcataatatcgagcagaccgcgctc
aacaccaacctcgaagccgcgcatgaaatcgcacgccagctgcgcctgcgcgacatggcc
gggctcgtcgtgatcgacttcatcgacatggatcatggctcgaacgtccgcaaggtcgag
cgcgcgatgaaggacgcgctgaaaaacgatcgcgcgcgcatccaggtcgggcgtatttcg
ggtttcggcctgatggaaatgagccgccagcgactgcgcaccggcgtgctcgaagcatcg
acgcgcccctgcccgcattgcgaaggcaccggcctcgttcgcaccgcctcgtcggcgggc
ctcagcgcgctgcgcctgatcgaagaggaggccgcgcgcggcaagggcagccgcatcacc
ctgcgcgccagccaggaagcgaccttctacctgctcaacgaaaagcgccgcgaactgcgc
gacatcgaagaactttacggcgtcaccgtcgaaatcctgcccgacggcgagaccgagggc
gcgcggatggcggtcgaggtcagcggcccgccgccggtcgcccgccgcagctttgccccg
atcgcgccgatcgaggatgacgacgacgacatccccgaggacgaggatgacgaagccgag
gacgaggccgcggacgaacgccccgcgcgctcgcgcgatcgcaaggaaggcgaaggcgac
ggtgaaggccgcaagcgtcgccgtcggcgtcgccgtggccgccgcggtcgccgcgacgag
gaaggcaatgaaattgccgacggcagcgacgacggcgaagcccgtgatggcgacgccgag
ggcgaggacaatggtgaagccgagagcgagagcgacgcggcacccgcagaggcgaccgcc
gaaaccgacgccgacacggccgacgccaagccgcgccgccgccggggcggacgcggacgc
aaaaaggccgacgcggtcgatgccaccgacgaagcggcagttgcggacgaacccgctgcg
ccggtcgaagccgaggtaaccgaaccggtcgccgaggaagcgccggcagccgaggaaaag
ccgaagcgcaagcgcgcaccgcgcaagaccaaggccgccgcagccgcggaggccgccgag
gctgccgaagcggcgcccgaagcggttgaaccggagcctgtcgccgaaaccgaaaccgaa
gccgaacccgccaagcccgcgccgaagaagcgcgccagccgcgcgaaaaaggcggtcgcc
gccgaagcggcgcccgaggccgcggcaacgcgcgaggctgaaccggtcgcggccgatgcc
gaagacaatggtgtcggccccgacggcgaaccgcgccgcggctggtggcagcgcaccttc
ggcaactga
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