Streptococcus periodonticum: EHW89_01880
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Entry
EHW89_01880 CDS
T06568
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
spei
Streptococcus periodonticum
Pathway
spei03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spei00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EHW89_01880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spei03019
]
EHW89_01880
Messenger RNA biogenesis [BR:
spei03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
EHW89_01880
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Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_KhpA-B
LMBR1
Motif
Other DBs
NCBI-ProteinID:
AZQ41278
UniProt:
A0A3S9MQ03
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All DBs
Position
369023..370630
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AA seq
535 aa
AA seq
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MEMIFAGVFAVIIGLVIGYVSITVRMKSAKEAAELTLLNAEQEATNLRGQAEREADLLLK
EVKRESKSLKKEALLEAKEEARKYREEVEAEFKSDRQELKQLESRLTERATSLDRKDDNL
TNKEKILEQKEQSISDRNKNLEARENKLTELEQHKEAELERVASLSQTEARDIILTQTED
KLSKEIATRIREAEQEVKERSDKMAKDILVQAMQRIAGDYVAEQTNSTVHLPDDTMKGRI
IGREGRNIRTFESLTGIDVIIDDTPEVVTLSGFDPIRREIARMTMEALLKDGRIHPARIE
ELVEKNRLEIDHKIREYGEAAAYEIGAPNLHPDLMKIMGRLQFRTSYGQNVLRHSVEVAK
LSGVIASELGENANLARRAGFLHDIGKAIDREVEGSHVEIGTELARKYKEHPIVVNTIAS
HHGDVEPESVIAVIVAAADALSAARPGARSESLESYIKRLQDLEEIANSFEGVKNSFALQ
AGREIRIMVNPGQIKDDKITILAHDVREKIENNLEYPGNIKVTVIREMRAVDYAK
NT seq
1608 nt
NT seq
+upstream
nt +downstream
nt
atggaaatgatttttgcaggtgtttttgccgtcatcattggtttagtcattggatatgta
agtatcacagttcgcatgaaatctgcgaaagaagctgcggaacttactcttttaaatgct
gaacaagaagcaactaatttacgtggacaagctgagcgcgaagcggatttgttattaaaa
gaagtgaagcgcgaaagtaaatcccttaaaaaagaagcactgttagaggcaaaagaagaa
gccagaaaatatcgagaagaagttgaggcagaatttaaatctgatcgtcaagaattgaag
caattggaaagtcgtttgacagaacgtgcgacaagtcttgatcgtaaagatgacaatttg
accaacaaagaaaaaatactcgagcagaaagaacaaagtatttctgatagaaacaaaaac
cttgaggcgcgtgaaaacaaactgacagagttggagcagcacaaagaagcagaattagag
cgtgttgcttcactttcacaaactgaagccagagatatcattctcactcagactgaggat
aagttatcaaaggaaattgcgacgcgtattcgtgaagcagagcaagaagtcaaagaacgt
tctgataaaatggcaaaggatattttagtccaagccatgcaacggattgcaggtgactat
gttgcggagcaaaccaattcaacagttcatctgccggatgatacgatgaaaggtcgcatt
attggacgtgaaggtcggaatattcgaacctttgaaagtttaacgggtattgatgtcatt
attgatgacacaccagaagtggtgactttatctggttttgatcctattcgacgtgaaatt
gcacgcatgacaatggaagccctgctgaaagacggtcgtatccacccagctcgcattgaa
gaattagtagagaaaaatcgtctggaaattgaccataagattcgtgaatatggtgaagca
gcggcttatgaaatcggtgcaccaaacttacatccggatttgatgaagattatgggacgc
ttgcaattccgtacgtcatatgggcaaaatgtattgcgtcattctgttgaagttgctaag
ttgtctggtgtcattgcaagtgaactcggtgaaaatgctaacttagctcgccgtgcaggc
ttccttcacgatattggaaaggctattgaccgtgaagtggaaggtagccatgtggaaatt
ggaacagaattggctcgtaagtataaggaacatccaattgtggtcaatacaattgccagt
catcatggtgatgtagaacctgaaagtgtgattgcagttattgttgcagcagccgatgcg
cttagtgcggctcgtccaggtgctcgtagcgaatcccttgaaagctatatcaagcgcctg
caagatttggaagaaattgccaatagctttgagggcgtgaaaaatagttttgctttacaa
gcaggtcgtgagattcggattatggtcaatcctggtcaaatcaaagacgataagattact
atcttggctcatgatgtgcgtgaaaagattgaaaacaacctcgaatatccaggaaatatc
aaagtaacggtcattcgggaaatgcgtgctgtagattatgccaaatag
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