Streptococcus periodonticum: EHW89_06450
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Entry
EHW89_06450 CDS
T06568
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
spei
Streptococcus periodonticum
Pathway
spei03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spei00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EHW89_06450
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spei03019
]
EHW89_06450
03009 Ribosome biogenesis [BR:
spei03009
]
EHW89_06450
Enzymes [BR:
spei01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EHW89_06450
Messenger RNA biogenesis [BR:
spei03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EHW89_06450
Ribosome biogenesis [BR:
spei03009
]
Prokaryotic type
rRNA helicases
EHW89_06450
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
AZQ42118
UniProt:
A0A3Q9F411
LinkDB
All DBs
Position
complement(1328222..1329778)
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AA seq
518 aa
AA seq
DB search
MKFNELHLSAELLAEIDKAGFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTL
EKINTENPIVQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALRSGA
HIVVGTPGRLLDLIKRKALKLNHVETLILDEADEMLNMGFLEDIEAIISRVPEERQTLLF
SATMPDAIKRIGMKFMKEPTHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLMDVEQPE
LSIVFGRTKRRVDELTRGLKIRGFRVEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAA
RGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQIIESLTKK
RMKGMKPATAEEAFQAKKKVALKKIERDFADENIRNQFEKFGKDARKLATEFTPEELALY
ILTLTVQDPDTLPEVEIAREKPLPFKYVPGANKGNRNNKNGRRSNDRRDRTNGRDNYKKG
GRHDRFDKEKRYRKDHKKPRNTSSEKKTGFVIRNKGDK
NT seq
1557 nt
NT seq
+upstream
nt +downstream
nt
ttgaaatttaatgaattacatttatctgctgaattgttagcagaaattgacaaagcgggc
tttgtggaagccagcccaatccaagaacaaacaatcccgcttgctatggcaggaaaagat
gtgattggacaagctcagactggtacaggaaagacagccgcttttggttttccgactctt
gaaaaaattaacacagaaaatcctattgttcaggctttagtcattgcaccaactcgtgaa
ttagctgtccaaagtcaagaggaactcttccgctttggtcgaagcaaaggtgtgaaagtc
cgttctgtttatggcggatccagcattgaaaagcaaatcaaggctctccgttcaggtgcg
cacattgttgttggaactccaggacgtttattagacctcattaagcgcaaagcactgaaa
ctcaatcatgtagaaacgcttattttagacgaagcggatgaaatgctcaatatgggtttc
ttagaagacattgaagcaatcatctcacgcgtgccggaagagcgtcagactcttctcttt
tcagctactatgccagatgctatcaagcggattggcatgaagtttatgaaagagccaaca
catgtcaaaattgcagcaaaagaattgacaacagaactggtggatcaatattatatccgt
gtaaaagaaaatgaaaaatttgataccatgacacgtctaatggatgtggaacaaccagaa
ctttctatcgtttttgggcgtaccaaacgccgagttgatgaattgactcgtgggcttaaa
atccgtggtttccgcgtagaggggattcatggtgatttagaccaaggaaaacgtctccgt
gttcttcgcgactttaaaaacggaaatttagatgttcttgttgcgacagacgttgctgcg
cgtggtttggatatttctggtgttacacatgtttacaattatgacattccacaagaccca
gaaagttatgtacaccgtattgggcggacaggtcgtgctggaaaatctggtcagtccatt
acatttgttgcaccaaatgaaatgggttatcttcaaatcattgaaagtttgaccaaaaaa
cgtatgaaaggcatgaaaccagccactgcagaagaagcctttcaagctaagaaaaaagtt
gcacttaaaaagattgagcgagattttgcggatgaaaacattcgcaaccaatttgaaaag
tttggcaaagacgctcgcaagttggcaactgaatttacaccggaagaattggctttatat
atattgaccttaaccgtacaagatccagacactctaccagaggtagaaatcgcgcgtgaa
aagccattaccatttaagtatgttccgggagctaataaaggcaatcgtaacaacaaaaat
gggcgtcgtagtaatgatcgtcgtgaccgtactaatgggcgtgacaattacaaaaagggt
ggtcgtcacgatcgctttgacaaagaaaaacgttatcgcaaagaccacaaaaaacctcgc
aatacttcaagtgagaagaaaacaggttttgtcatccgtaataaaggtgataagtaa
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