Solanum pennellii: 107001065
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Entry
107001065 CDS
T04130
Name
(RefSeq) protein CLP1 homolog
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
spen
Solanum pennellii
Pathway
spen03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107001065
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spen03019
]
107001065
Enzymes [BR:
spen01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
107001065
Messenger RNA biogenesis [BR:
spen03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
107001065
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
nSTAND3
CbiA
AAA_22
SRPRB
FtsK_SpoIIIE
DUF1611
ATP_bind_1
ABC_tran
AAA_29
AAA_24
Motif
Other DBs
NCBI-GeneID:
107001065
NCBI-ProteinID:
XP_015054892
UniProt:
A0ABM1FCG9
LinkDB
All DBs
Position
1:complement(3686011..3697935)
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AA seq
439 aa
AA seq
DB search
MAYGGTNVNPLAATGGSTTVRQVKLEKECELRVEASADSPLRLRLLTGTAEIFGTEIPPG
IWLNFPPRLKFAVFTWYGATIEMDGSTETDYTADETPMISYINVHAVLDGRRNRAKASPS
DSDTSQGPRVIVVGPTDSGKSTLSRMLLSWAAKQGWKPTFVDLDIGQGSITIPGCVAASP
IELPIDPVEGIPLEMPMVYFFGHVTPSANIDQYKVLVKELAKTLETQFSGNAESRASGMV
INTMGWIEGVGYELLLHAIDTFNATVILVLGQEKLCSMLKDVLKNRPNVDVVKLQKSGGV
VSRNAKVRQKARGYRIREYFYGSSNDLSPHSNVVNFSDLFIYRIGGGPQAPRSALPIGAE
PAADPTRLVPVSISRDLLHLVLAVSYAKEQDQIISSNVAGFIYVTDIDLHRKKITYLAPC
AGELPSKNLIVATLTWIEN
NT seq
1320 nt
NT seq
+upstream
nt +downstream
nt
atggcttatggaggcacaaatgtcaatccattggcagcaacaggtggttcaacaacagtg
aggcaggtgaagctggaaaaagaatgtgagctccgagttgaagccagcgctgactcgcct
ctccgtcttcggctcctaactggcacggctgagatttttgggactgaaatccctcctgga
atctggctcaacttccctccaagacttaaatttgcagtttttacttggtatggagccaca
atcgagatggacggttccactgaaactgattatacagcagatgagacgccgatgataagc
tatataaatgtccatgctgtacttgatggacgaagaaatcgtgccaaagcttcgcctagt
gattccgacacttctcagggcccaagagttattgttgtgggacctacagattctggcaag
agtactctgtcaaggatgcttcttagttgggctgcgaaacagggatggaaacctactttt
gttgatttggacataggtcaaggatcgataactattccaggatgtgttgctgcttcacca
atcgagttgcctatcgatccagttgaaggaattccacttgagatgcctatggtctacttc
tttggccatgtgactcctagtgccaacatagatcagtacaaggtactcgtcaaggagctt
gctaagactctggagacacaattttctggcaatgctgaatctcgagcttcaggcatggta
ataaatacaatgggatggatagagggagttggttatgagttgctactccatgcgattgat
acattcaatgccacagttattcttgtcttgggtcaggaaaaactttgcagcatgctaaaa
gatgtattgaagaatcggcccaatgtggatgtggtgaaacttcaaaaatctggtggtgtt
gtatcaaggaatgcaaaagtacggcagaaagcaaggggctatagaatacgggaatatttt
tatggctcttcgaatgatctttcaccacattctaatgtggtgaacttcagtgacttgttc
atctaccgaatagggggtggaccacaagctccacgctcagctttacctattggtgcagag
cctgctgcagatcctacaagattggttcctgttagtatcagccgagacttgctccatttg
gttcttgctgtttcatatgccaaagaacaagatcaaataatttccagtaatgttgctgga
ttcatctatgtaaccgacatagacttacacaggaaaaagataacataccttgcaccatgt
gctggagaacttccgagcaaaaacctaattgtggcaaccttaacatggatcgaaaactga
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