Solanum pennellii: 107002134
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Entry
107002134 CDS
T04130
Name
(RefSeq) transcription elongation factor SPT6-like isoform X1
KO
K11292
transcription elongation factor SPT6
Organism
spen
Solanum pennellii
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spen03021
]
107002134
03036 Chromosome and associated proteins [BR:
spen03036
]
107002134
Transcription machinery [BR:
spen03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
107002134
Chromosome and associated proteins [BR:
spen03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
107002134
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SH2_2
HHH_7
YqgF
SPT6_acidic
Spt6_S1
Tex_central_region
HTH_44
HHH_9
HHH_3
OB_PDCD11
SH2
Tex_N
S1_RRP5
Motif
Other DBs
NCBI-GeneID:
107002134
NCBI-ProteinID:
XP_015055528
UniProt:
A0ABM1FDX7
LinkDB
All DBs
Position
10:complement(79071236..79081445)
Genome browser
AA seq
1648 aa
AA seq
DB search
MAGKNVISDDEDEVGMEEEERDDEPVDGDGVDEREDEDEDEEEEEGQDEYEKDGFIVDDV
EEEEDEDEDDRADSDDERQKKKKRKKRESERNYVLDEDDYELLQESNIAVPRPKLESKKF
KRLKKAQRDMEDEGSGFYEEEEFGETGRRGRTAEQKLERSLFGDDEGQPLEDIAEEEERL
EEEEDADIGEEDEMADFIVDEEEVDEHGAPIRRKKVNKKKSRQAAGVSSSALQEAHDIFG
DVDELLMRRKQDRAKSSMHDESGEWSERRLEDEFDPTILAEKYMTEKDEHIRKIDVPERM
QISEESTGPVTPETISMEESIWIYNQLVAGVVPLFKKKDSGTSDEEKELPIDKDDIMRFL
DLMHAQKFDVPFIAMYRKEECMSLFKEPEEDGTSDDGPKNSDKKPSVRWHKVLWAIQDLD
RKWRLLQKRKSALELYYKKRFQEESRRVYDETRLKLNQQLFESITNSLQASESEREVDDV
DSKFNLHFPPGEVGVDEGQYKRPKRKSQYSICSKSGLWEVASKLGYSAEQFGRHMSLEKM
GDELEDAREPPEEMASNFTCAMFETPQAVLKGARHMAAVEISCEPSVRKHVRTTYMNHAV
VSTSPTPEGNTVIDSFHQFAGVKWLRDKPLSEFVDAQWLLIQKAEEEKLLQVTIKLPEVH
LNQLTTDSKDHYLSDGVSKSAQLWNEQRKLILEDAIFNFLLPSMEKEARSLLTSKAKSCL
LMEYGNVLWNKVSVGPYQRRENDISSDEEPAPRVMACCWGHGKPATTFVMLDSSGEVLDI
LYAGSLSLRGQNVNDEQRKKNDQQRLLKFMMDHQPHVVVLGAVNLSCTRLKEDIYEIIFK
MVEDNPRDVGHEMDNLNIIYGDESLPHLYENSRISADQLPTQSGIVRRAVALGRYLQNPL
AMVATLCGPGREILSWKLNTLESFLTPDEKYEVVEQVMVDVTNQVGVDLNLAISHEWLFA
PLQFISGLGPRKAASLQRSMVRQQTIFTRKDLLTEHHLGKKVFINAVGFLRVRRSGYTAN
SNTYIDLLDDTRIHPESYTLAQELAKDIYLKDMGEEANDDDEVLEMAIEHVKEKPHLLRL
VNAYEYAKEHNRFDKRETLNGIKLELMQGFQDWRRQYVEPSQDEEFYMISGESEDTLSEG
RIVQATVRRVQPQKAICSLECGLTGILSKEDSSDDWRDVNDLTEKMREGDILTCRIKSIQ
KNRYQVFLSCKENDMRNNRYQNNQNLDPYYHEDRTSLQTEKEKARKEKELAKKHFKPRMI
VHPRFKNITADEAMEFLSDKEPGESIVRPSSRGPSYLTLTLKVYDGVYAHKDIVEGGKEH
KDITSLLRIGKTLKIGEDTFEDLDEVMDRYVDPLVAHLKAMLNYRKFKTGTKAEVDELLK
IEKSEYPMRIVYSFGISHEHPGTFILTYIRSSNPHHEYVGLYPKGFKFRKRMFEEIDRLV
AYFQRHIDDPHDSGPSIRSVAAMVPMRSPASGGSSGFGGGWGGSSNDSGRRGGQSGDRDR
SYGSGSRPGRNDYRNRNNQDDQSGLPPRPYGGGGRGRGRGRGRGRGNNDNNDGQDSDYGS
QKWSSKESGVGGWGEVQNSPSRESWGGGGGGGGGSGDGGSWGASPSGGGGGGWGASPSGG
DSWGKDTGGEAEDSGWGGSKKSGGSGGW
NT seq
4947 nt
NT seq
+upstream
nt +downstream
nt
atggctggaaaaaacgtgatctccgatgacgaagatgaagtcggaatggaggaagaggag
agggatgatgagccagttgatggggatggagtggatgagcgggaagatgaggatgaagac
gaggaagaagaagaaggtcaggatgaatatgagaaagatgggtttatagtggatgatgta
gaggaagaagaggatgaggatgaagatgatagagctgacagtgatgatgagaggcaaaag
aagaagaaaaggaagaaaagggagtcagagaggaattacgtgcttgatgaagatgattat
gaacttctacaggaaagcaatattgcggtgcctcgtccaaaacttgagagcaaaaagttc
aagcggctaaaaaaagctcagagggatatggaggatgagggttctggtttttatgaggag
gaggagtttggtgaaactggcaggcgagggcgtacagctgagcagaagcttgagcgtagc
ttatttggtgatgatgaagggcaaccacttgaggatattgctgaggaggaagaaaggctg
gaggaagaagaggatgctgacattggtgaggaagatgaaatggcagacttcatcgttgat
gaagaagaagttgatgaacatggtgctccaattagaaggaaaaaggtaaacaaaaagaag
tccaggcaggcagcaggagtttcgtcctctgctctccaggaagctcatgacatatttggt
gatgttgacgaacttttaatgcgtcgaaaacaagatcgggccaaatccagcatgcatgat
gaatccggtgaatggagtgaaaggagacttgaagacgaatttgatcctactattctagct
gagaaatatatgactgagaaggatgagcacattcggaaaatagatgtccctgaaagaatg
cagatatccgaggaaagcactggtcctgtaacacctgaaaccatcagtatggaagagagt
atctggatctacaatcagcttgttgctggtgttgtgcctctttttaagaagaaagatagt
ggtacatctgatgaagagaaagagctaccaatagataaagatgacattatgcgttttctg
gatttgatgcatgcgcagaagtttgatgtcccgttcatcgccatgtaccgtaaggaggaa
tgcatgagcttatttaaggaaccagaagaggacggaactagtgatgatggtcctaaaaat
tctgacaaaaaaccttcagtaagatggcataaggtgctttgggcaatccaagatttagac
aggaagtggcgcctccttcagaagcggaagtctgcacttgagttgtactataagaagcgt
tttcaggaagagtcgcgtagggtgtatgatgaaacacgtctaaagttgaatcagcagctc
tttgaatcaattactaattcactccaagcgtctgagtctgaaagagaggttgacgatgtt
gactcaaaatttaacttgcacttcccacctggagaggtcggtgtggatgaaggacaatat
aagaggccaaagaggaaatcacaatacagtatatgcagcaaatccggcttatgggaagtg
gcgagcaaattgggatacagcgccgagcaatttggtagacatatgtctctagaaaagatg
ggggatgagctggaggatgctagggaaccaccagaagagatggcatcgaacttcacctgt
gcaatgtttgaaacacctcaagctgtgcttaaaggcgctagacacatggcagcagtagag
atcagctgtgaaccaagtgtccgtaaacatgtgcgtactacctatatgaaccacgccgta
gtatcaacgagtcctactcctgaggggaatacggtgattgattccttccatcaatttgct
ggagtcaagtggttacgggataaacctctctccgaatttgtggatgcacagtggcttctt
atccagaaggctgaagaggagaaactcctccaagttactatcaagctgcctgaagttcat
cttaaccagctgacaactgactcgaaagatcattatctcagtgacggtgtgagtaaatct
gcccagttatggaacgaacagagaaagttaatactcgaggatgcaatcttcaattttctt
ctgccttcaatggaaaaggaagcaagatccttgctaacaagtaaagcaaagagctgtctt
ctcatggaatatggtaatgttttgtggaataaagtgtcagttggaccatatcaacgcaga
gagaatgatattagctctgatgaagagcctgcacccagggttatggcttgctgttggggc
catggtaagccagcaaccacttttgtgatgttggattcgtcgggagaggttttggatatt
ctgtatgctggatctcttagccttcgtggccagaatgttaatgatgagcagcggaagaag
aatgaccagcagagactgttaaaattcatgatggaccaccaaccacatgtggtggtgctg
ggagctgtaaatctgtcttgtacacggcttaaggaggatatttatgagattattttcaag
atggtggaggataatccaagagatgttggtcatgagatggataatttgaacataatatat
ggagacgaatcccttccgcatctctatgagaattcccgcatttctgctgaccagcttcct
acgcagtcaggtattgtgaggcgcgctgtggcattgggtcgttatcttcaaaatcctcta
gcaatggtagcaacattatgtggaccagggagggaaattttatcttggaagctcaatact
ttagagagctttctcacaccagacgagaagtatgaggtggttgaacaggttatggtggat
gtaactaaccaggtaggtgttgatcttaatttggctataagtcatgaatggctttttgcc
ccactgcaatttatttcgggtctgggtcccagaaaggcagcatctcttcaaagatccatg
gtaagacagcagacaatctttacgaggaaggatctcttaactgaacatcatcttggtaaa
aaggtatttatcaatgcagttggcttcttgcgagtacggcgcagtggatacactgcaaat
agcaatacatatattgatttgttggatgatacaaggatccatccagaatcctatactctt
gcacaagagttggcaaaagatatttatcttaaagacatgggtgaagaagcaaatgatgat
gatgaagtgcttgaaatggcaatagagcatgttaaagagaagccacatttgttgaggttg
gttaatgcttatgaatatgctaaagaacataaccgttttgataaaagggaaacccttaat
ggtattaagttggagctaatgcaagggtttcaagattggcgtagacagtatgtcgagcca
agccaggatgaagagttctatatgatttctggtgagtctgaggatacgctttctgaggga
agaatcgtacaggcaacagttcgtcgggttcaacctcagaaagctatctgttctctggag
tgtggattgactggtattctttccaaggaagactcttcagatgattggagagatgtcaat
gatttgactgaaaaaatgcgtgaaggtgatatcctaacttgcagaatcaagtcaatccaa
aaaaataggtaccaggttttcctgagttgtaaagagaatgatatgagaaataataggtat
cagaataatcagaacttggatccatactaccatgaagatcgcactagcttacagactgaa
aaagaaaaagctcgtaaagaaaaggagcttgcaaagaagcatttcaagccaaggatgata
gttcatcctcgattcaaaaatataacagctgatgaagctatggagttcctctctgacaaa
gaaccgggtgaaagcattgtacgtcccagctcacgtggaccatcatatttgactttaact
ctcaaagtgtatgatggagtgtatgctcacaaggatattgtggaaggtggaaaggaacat
aaggatataacaagcttgctgcgcatcgggaaaacactgaaaataggagaggatactttt
gaagatttagatgaggtaatggatcggtatgttgatccattagtagctcatttgaaggca
atgctaaattaccgtaagtttaagacgggaactaaggcagaagttgatgagcttttgaaa
attgagaaatctgagtaccctatgagaattgtctatagctttggtatttctcatgaacac
cctgggacattcattttgacttatatacgaagttccaacccacaccatgagtatgttggt
ttgtacccgaaaggatttaaattccgtaagaggatgtttgaagaaattgatcgccttgtg
gcatattttcaaaggcatattgatgatccccatgattccggtccatcaatacgatcagtt
gcagcaatggtgcctatgcgcagccctgcaagtgggggttcctcaggatttggtggcggg
tggggtggttcatccaatgatagtggtcgaagaggtggtcagtctggggacagagatagg
tcttacggttcaggttctagaccaggtagaaatgactacagaaatcgaaacaatcaggat
gatcaaagtggattgccaccaaggccctacggtggtggtggtcgtggacgtggtcgtggt
cggggacgtggtagaggaaataatgataataatgacggacaggattcagattatggctct
caaaagtggagttctaaggaaagtggagtaggaggttggggtgaagtccaaaattcacct
tccagggagtcttggggtggtggtggtggaggtggaggtggtagtggagacggaggtagt
tggggtgccagtcccagtggtggtggtggtggtggttggggtgctagccctagtggtggc
gacagctggggaaaggacactggtggtgaggccgaggattctgggtggggtggcagtaag
aagtccggtggcagcggagggtggtga
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integrated database retrieval system
