Solanum pennellii: 107002223
Help
Entry
107002223 CDS
T04130
Name
(RefSeq) protein SMG7-like
KO
K14409
protein SMG7
Organism
spen
Solanum pennellii
Pathway
spen03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107002223
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spen03019
]
107002223
Messenger RNA biogenesis [BR:
spen03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
107002223
mRNA cycle factors
Common to processing body (P body) and stress granule
107002223
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
Motif
Other DBs
NCBI-GeneID:
107002223
NCBI-ProteinID:
XP_015055643
LinkDB
All DBs
Position
10:78827318..78835650
Genome browser
AA seq
967 aa
AA seq
DB search
MAIQMDSSLDHSSRERVQRLFNKNVELDNKRRKAAQARVSSDPNAWQQMRENYEAIILED
HAFSEQHEIEYALWQLHYRRIEELRARFNAAIASSGSTSQTGKGPPRNGSDNFIKIRTQF
KTFLSEATGFYHDLMVKIRAKYGLTVGGFSDDPGDQIPSSNEANKSIEVKKGLVSCHRCL
IYLGDLARYRGLYGEGDSKARDLAAASSYYTQASSLWPSSGNPHHQLAILAFYSSDELVA
IYRYFRSLAVENPFTTARDNLIIAFEKNRQYFSQLPVDAKASSTKVTPSRTTGRGRGKYE
TRPSLKDGKVEASLPKEKALSTSEIFKTFSTGYVRLNGILFTRTSLETFDEVLLMVKNDL
LELLSSGSDEKYNFGSTAADCRLAIVRLVAILIFTIHNVIRENDNQSYAEILQRSVLLQK
AFTAAFEFMGHLVERCIQLKDPSSSFLLPGILVFVEWLACHQDIALGNESEENQARARSF
FWKNCISFFNKLMSTGSKFVDEDEDETCFFNMSRYDEGETGNRLALPEDFELRGFVPLLP
AQLILDFSRKCSFGGDSGSKEKKCRLQRMIAAGKVLATVVRVGEEGIYFDTRGKKFIIGM
EPQTSDNYLLNGLNDTKLSGIELESPDAGQLTVGDLLPKQQLYVECEEEDEVIVFKPSVI
EKSNDISSSTMTSAVPVSGISVVNASSGASMECVDSCCEMGPFPSALDGLRLQNGWSTTR
LPTSISLTNTQYMQAIQPSTSMWSVEQGAFMNGLGGLSLTGNGLMTEAELLNHPEMVSPA
AAHSAPLPQSVKFSTANNIHFQVPEAAMSSTFSSLAPSVAFSDSMSMKSLAITPTGMKKN
PVCRPGRHLGPPPGFGSVSSKVDDSSFASTLKNENNPIPRMDDYSWLNGYQLPSAHQSIV
YKNSDNHSAQPYHSVSNSSLVGISFPFPGKQVPSLHMQSDIQKANNQSVGLPQQYQGQSL
WQDRFFV
NT seq
2904 nt
NT seq
+upstream
nt +downstream
nt
atggccattcagatggatagcagtttagatcattcctcacgggaacgcgttcagcggctt
ttcaacaagaatgtggagctggataacaagcgtaggaaagcagcacaagctagagtatct
tctgaccccaacgcatggcaacaaatgcgtgaaaactatgaagctatcatccttgaggat
catgctttttctgaacaacatgaaatagagtacgccttgtggcagttgcattatagaaga
attgaagaactgcgtgcacgcttcaatgctgcaatagcttcaagtggatcaacctctcag
actgggaaaggtccacctcgtaacgggtcggataacttcataaagatccgcacgcagttc
aagacttttctgtcagaagcaactggcttttatcatgatttgatggtgaaaatcagggca
aagtatggcctgacagtaggaggtttctctgatgatccaggggatcagattccttcttct
aatgaagctaataagtctattgaggtgaagaaaggcttggtatcctgccatcgttgtttg
atttatctgggtgatcttgctcggtacagaggcttatatggtgagggtgactctaaagct
cgtgaccttgcggcagcatcaagttattacacgcaagcttcttcactgtggccatcaagt
ggcaaccctcatcatcagcttgcaatattggccttctattccagtgatgagttggtggca
atctatcggtattttcgtagtcttgcagtagagaatccttttacgactgcaagggacaac
ctgatcattgcatttgagaagaatcgtcaatatttctcccagctgccagtggatgctaag
gcttcgtctaccaaggtaactccttcccgaacaactggtagaggacgaggtaaatatgaa
acaaggccgtctctgaaagatggaaaggttgaggcaagtttaccaaaggaaaaagcatta
agtacatctgaaatcttcaaaacctttagcacagggtatgttcggttgaatggcattctc
ttcacgcgcactagcttggagacctttgatgaagtgttgttgatggttaagaatgatctg
cttgagcttctctcttctgggtctgatgagaagtataattttggttcaactgctgctgac
tgcagactggcaattgtcaggctcgtggccatcttaatattcaccatccataatgtgatt
agggaaaatgataatcagtcatatgccgagattctacaaagatcagttcttctgcagaag
gcatttactgctgcttttgagttcatgggtcatctggtcgagagatgtatccaattaaag
gatccctcatcaagcttcttattgcctggtattttggttttcgtagaatggttagcctgc
catcaagatattgcacttggtaatgaatcagaggaaaaccaagctagggctagatccttt
ttctggaagaactgtataagtttctttaataagctaatgtcaactgggtctaagtttgtc
gatgaagatgaagatgaaacatgctttttcaatatgagcaggtatgatgaaggtgagact
ggcaatcgtcttgcgttgccggaagactttgaactcagaggatttgttcctcttcttcca
gcacagcttatccttgacttctcaaggaaatgttcttttggtggtgatagtggaagtaaa
gagaagaagtgccgtcttcagaggatgattgcagctggaaaggttcttgctactgtggtc
cgggttggagaagaaggaatatattttgacacaaggggaaagaaatttatcattggtatg
gagccccaaacttctgataattatctacttaatggcttaaatgataccaaattaagtggt
attgaactggaaagtccagatgctggacagttgactgtgggagatcttctgccgaagcag
caattgtatgtggaatgtgaagaagaagacgaagttattgtttttaagccatcagtgata
gaaaaatctaatgacatctcttcaagtactatgacctcagcggttcctgtatctggtatt
agtgttgtcaatgcttcttctggtgctagcatggagtgtgttgattcgtgttgtgagatg
gggccatttccatctgcactcgatggattgaggttgcagaatggttggagtactacaagg
ctgccaacaagcatttctcttactaatacccaatatatgcaggcaatccaaccaagtact
tcaatgtggtctgtagagcaaggtgcttttatgaatggattgggtggcttgagcttgaca
ggaaatgggctaatgacagaagctgagttgctaaatcatccagaaatggtgtcacctgca
gcagcacattcagctcctttgccacagtctgtgaagttcagcactgcaaataatattcac
ttccaggttcctgaggctgctatgtcatctaccttcagttcacttgcaccctccgtagct
ttctccgatagcatgtcaatgaaatctttagcaattactccgacaggaatgaagaaaaat
ccagtgtgccgacctggtaggcatctgggtccacctccagggtttggttctgtttcttcc
aaagtagatgactcttcatttgcctcgacacttaaaaatgaaaataaccccatccctcgt
atggatgattatagctggttgaatggatatcagttaccttcagcacatcagagcattgtt
tacaaaaactcggacaatcattcagctcaaccatatcactctgtaagcaatagtagctta
gtcgggattagctttcctttcccagggaagcaggtgccctctctgcacatgcagtcagat
atccagaaagcaaataaccaatctgttggattgcctcagcagtatcaaggacagtccctg
tggcaagatcgtttctttgtgtga
DBGET
integrated database retrieval system