Solanum pennellii: 107002259
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Entry
107002259 CDS
T04130
Name
(RefSeq) phytochrome A
KO
K12120
phytochrome A
Organism
spen
Solanum pennellii
Pathway
spen04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
107002259
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GFIT
Motif
Pfam:
PHY
PAS
PAS_2
GAF
HATPase_c
HisKA
PAS_4
PAS_9
PAS_8
Motif
Other DBs
NCBI-GeneID:
107002259
NCBI-ProteinID:
XP_015055689
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Position
10:29589738..29596155
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AA seq
1123 aa
AA seq
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MSSSRPSQSSTTSSRSKHSARIVAQTSIDAKLHADFEESGDSFDYSSSVRVTSVAGDEEK
PKSDKVTTAYLHQIQKGKFIQPFGCLLALDEKTLKVIAFSENAPEMLTMVSHAVPSVGEH
PVLGIGTDIRTIFTGPSGAALQKALGFGEVSLLNPVLVHCKNSGKPFYAIVHRVTGSLIL
DFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVM
GYKFHEDDHGEVVSEITKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMICDCRAKHVKV
VQDEKLPFDLTLCGSTLRAPHYCHLQYMENMNSIASLVMAVVVNDGDEEGESSDSSQSQK
RKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKELELENQFLEKNILRTQTLLC
DMLMRDAPLGIVSQSPNIMDLVKCDGAALLYKNKIHRLGMNPSDFQLQDIVSWLCDYHTD
STGLSTDSLYDAGFPGALALGDAVCGMAAVRISDKDWLFWFRSHTAAEVRWGGAKHEPGE
KDDGRKMHPRSSFKAFLEVVKTRSIPWKDYEMDAIHSLQLILRNAFKDADVVNSNTNSIY
KKLNDLKIDGMQELESVTAEMVRLIETALVPILAVDVDGQVNGWNTKIAELTGLPVDEAI
GKHLLTLVEDSSVDTVNKMLELALQGKEEKNVEFEIKTHGPSRDSSPISLIVNACASKDV
RDNVVGVCFMAHDITGQKSIMDKFTRIEGDYRAIIQNPHPLIPPIFGTDQFGWCSEWNTA
MTKLTGWRRDDVMDKMLLGEVFGTQAACCRLKNQEAFVNFGVILNNAITGQESEKIPFGF
FARYGKYVECLLCVSKKLDKEGAVTGLFCFLQLASHELQQALHVQRLSEQTALKRLKVLA
YIRRQIRNPLSGIIFSRKMLEGTSLGEEQKNILHTSAQCQRQLNKILDDTDLDSIIDGYL
DLEMLEFKLHEVLVASISQVMMKSNGKNIMISNDMVEDLLNETLYGDSPRLQQVLANFLL
VSVNATPSGGQLSISGRLTKDRIGESVQLALLEFRIRHTGGGVPEELLGQMFGSEADASE
EGISLLVSRKLVKLMNGEVQYLREAGQSTFIISVELAVATKSS
NT seq
3372 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcttcaagacctagccaatcttccaccacttcatcaagatcaaagcacagtgct
aggatcgttgcacagacttctatagatgctaagctgcatgcagacttcgaggagtcaggt
gattcctttgactattcaagctcagtgagggttacaagtgtcgctggagatgaggaaaaa
ccaaagtcagacaaagttaccaccgcctaccttcatcagatccaaaagggcaagtttatc
cagccatttggttgtctgttagccctggatgagaaaacattaaaggtcatagcattcagt
gagaatgcccctgaaatgctgaccatggttagccatgctgttccaagtgttggtgagcat
ccagttcttggcatcgggactgatatcagaacgatcttcactggtcctagtggcgcagca
ttgcagaaagccttggggtttggggaggtttctctgttaaatcctgtccttgttcactgc
aaaaattctggaaagccattttatgcaattgttcatagggttacaggtagcttaatcctt
gattttgagcctgtgaagccctatgaagtacccatgactgctgcaggggccctgcagtca
tataaactagcagccaaagccattactcgcttgcagtccttgcccagtggcagtatggaa
agactctgtgacacaatggttcaggaggtttttgaactcacaggttatgacagggtgatg
ggatataagtttcacgaggatgatcatggagaggtggtgtctgagatcacaaagcctggc
ctcgagccttaccttggtttacattatcctgctacagatattccacaggctgcacggttt
ttgtttatgaagaataaggtccgaatgatttgtgattgccgagcaaagcatgtgaaggta
gtccaagatgagaagcttccatttgatttaacattgtgcggctctactcttagggcccct
cactactgccatttacagtatatggagaacatgaattcaattgcatcacttgtaatggca
gttgtggtcaatgatggggatgaagaaggagaaagctctgattcttcacaatctcaaaaa
agaaaaaggctctggggcctggttgtttgccacaacacgaccccaaggttcgttcccttt
ccactgaggtatgcatgtgagtttcttgcacaagtctttgccatacacgtcaacaaggaa
ctggaattggaaaatcaattccttgagaaaaatattctgcgtactcagactctcttgtgt
gatatgctgatgcgagatgctcccctaggtatcgtgtcacagagccccaacattatggat
cttgtcaaatgtgatggtgcggctctgctctataagaataagatacatcgattaggaatg
aacccaagtgactttcagctgcaggatatagtatcatggctttgtgattatcatacagat
tccacaggcttgagtacggatagcttgtatgatgctggttttcctggggctcttgctctt
ggtgatgcagtctgtggtatggcagctgtgagaatatctgataaggactggctgttctgg
ttcaggtcacacactgctgctgaagttagatggggtggtgcaaagcatgaacctggtgag
aaggatgatggcaggaaaatgcatcctaggtcatcattcaaagcattcctggaagttgtc
aagacaaggagtataccctggaaggattatgagatggatgcaatacactctttgcagctc
atactaagaaatgctttcaaggatgctgatgttgtgaattcaaatacgaattccatctat
aagaagcttaatgatctaaagattgacggaatgcaggaactagaatcagtgactgctgaa
atggtccgcttaattgaaacagctttagttcctatattagcagttgatgttgatgggcag
gttaatggatggaacacaaaaatagctgaattaactggtcttcctgttgatgaagcaatt
gggaaacatcttctcactctcgtggaggattcatcagttgataccgtgaataagatgttg
gaattagcattgcaggggaaagaggaaaaaaatgtagagtttgaaataaaaacacatggg
ccgtcaagagattctagtccaatcagcttaatcgtgaatgcatgtgcaagcaaagatgtt
cgggataatgttgtgggtgtgtgttttatggctcatgatataactggacaaaaaagcatc
atggacaagttcacccgaatcgaaggtgactatagagcgattatccaaaatcctcaccca
ttgatcccaccaatatttggcactgatcaatttggctggtgttctgagtggaacactgca
atgaccaagttaactggatggcggcgtgatgatgttatggataaaatgctgttaggggag
gtttttgggacacaggcagcttgctgccgtctcaagaatcaagaagcgtttgtaaatttc
ggagttatactaaacaatgctatcactggtcaagaatctgagaagattccttttggtttc
tttgcacgttacgggaaatatgtggagtgcttactctgtgtgagcaaaaagttagataaa
gagggtgcagtcacgggactcttttgtttcctgcaacttgctagccatgagttgcaacaa
gctcttcatgttcaacgattatcagaacaaactgcgttgaaaagattgaaagtattagct
tacataaggaggcaaattaggaatcctctttctgggattatattctctcggaagatgcta
gaggggactagcttgggcgaagagcagaaaaatatactgcatacaagtgcacagtgtcag
cgtcagctcaacaaaattcttgatgatacagatcttgatagcatcatagatggttatttg
gatctggagatgctcgagtttaagctgcatgaagtattggtagcatctataagtcaagtc
atgatgaagagcaatggaaagaatataatgatctcgaatgacatggttgaagatcttctt
aatgaaactttatacggagatagtccgaggcttcaacaagtccttgctaactttttgtta
gtatctgtgaacgctacaccaagtggcggccagcttagtatttcaggcaggctaacgaaa
gatcgtataggagaatctgttcagcttgctctcttggaattcaggataagacatacaggg
ggtggagtgccagaagaattgcttggccaaatgtttggtagtgaagccgatgcatctgaa
gaagggatcagcttacttgtcagcagaaaactggtcaagctgatgaatggggaagttcag
tatctaagagaggctgggcaatcaactttcattatatccgttgaactcgcagtggctacc
aagtcaagctga
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