Solanum pennellii: 107002281
Help
Entry
107002281 CDS
T04130
Name
(RefSeq) Fanconi anemia group J protein homolog
KO
K15362
fanconi anemia group J protein [EC:
5.6.2.3
]
Organism
spen
Solanum pennellii
Pathway
spen03440
Homologous recombination
spen03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
107002281
03460 Fanconi anemia pathway
107002281
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spen03400
]
107002281
Enzymes [BR:
spen01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
107002281
DNA repair and recombination proteins [BR:
spen03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
107002281
FA (Fanconi anemia) pathway
Downstream FA components
107002281
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
IQ_SCN5A_C
HBB
Cep192_D6
Pex19
DUF4230
zf-CCHC_4
Motif
Other DBs
NCBI-GeneID:
107002281
NCBI-ProteinID:
XP_015055724
LinkDB
All DBs
Position
10:complement(77859482..77874106)
Genome browser
AA seq
1284 aa
AA seq
DB search
MKKFKRAPPPPPPPSSSATQGPKPSKHVVHIGGIPVEFPYQPYGTQLAYMNRVIVTLDRA
HRDGHSHALLESPTGTGKSLSLLCSTLAWQQNCKSKNRYSYFTHSKPDPQALVDPIGHGG
GFIPETQPSGNPDTAPPAASNGTKKKKPAPTIFYASRTHSQITQVIREYRKTSYRVPMAI
LASRKHYCTNVNVRGQDNIDEQCKLLLKDQEAGCSEFKNAHKVKGHPSIQKGGCHEAHDI
EDLVKVGQIVKGCSYFGARSLADDAELVFCPYNYIINPVVRRAMEVNIKGAIIIIDEAHN
IEDICRDAGSVDVEEDILLQLQMELEQLIQSDTMIYQPLVEMTQDIRSWIARKKNTLEKH
GFQHYASCWTGDKALKELQEANVTKQCFPILQECASKAIKAASEAEPGTDHLSGMAASVL
EGLVSSLSYFFSGDGLHVCDYQLALQHYVKKSPGSAVGSWTQTFSLWCLNPAVVFREIAD
SCLSVILTSGTLSPMDSFSSELGVTFGTSLEAPHVIDVESQLCAAVISRGPRNYPLNASF
KTADSYAFQDALGTSLEEICKIVPGGCLVFFPSYKLMEKLSSRWKETGQWARLNARKPIF
TEPRGGQEEFESVLNGYYSSINQREKLVMGRKKKAKGSALSDGTPLEVSNENKKEGAAFL
AVCRGKVSEGIDFSDEKARVVIIVGIPFPNINDIKVDLKKKFNNTYKSSKNLLSGSEWYC
NQAFRALNQATGRCIRHRFDYGAVILLDERFCEARNRAYISKWLRNSIRHHSSFDKSMEE
LKSFFRDVKERVGKAASSIQSSVVDIEENAFVTNSIITRQKNQKFGTSDVKGLKEEENCA
LICQKAPLLCQSSCIDTMYNTSSTKMRIDAPHLMLNDDEDSDGRRAYIDSECDSAFSSRF
SGDPLIVSHAADPQLTIVKETPATDDIIHISSPQSFSKDEYSSSTIIQASSDLSDHLANH
STTHQKTELGCKSPCLTITPQKDVYTKANMISFDVESPINSSVNSHVGKRIKRLDLSSIV
HLDAEEFDTQMTKIPMHDSSTCKSRKIKDANQMIDSCSRISQLDKELEKSKSPWSSVLNN
YETSVVQSNLAMYERLQIFCSLCNNPLGLPENNLFVVCSRTLSTKTHLKSLWKGQPETPG
PSRHSIPILIANFSSVDQRIYERTSDNLSVQGIWCKEDGCVFKTIFCPFCVNSRHCLGVQ
VMASDASNVQLLNKVLLYCDCLMIKEPDASRKELSPSNNLSSDRGLSSIESFTFTPEQQN
LGGWRTTKSKMRLPKRSISSSAQR
NT seq
3855 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaatttaaacgagcaccgccgccgccgccgccgccgtcgtcgtcggcgacgcaa
ggtcctaaaccgtcaaagcatgtggtgcatataggtggtattccggtggagttcccatac
caaccctacggcacacagttggcttacatgaatcgagttattgtgacactcgatcgagca
cacagggatggacattctcatgcgctgcttgagtctcctacaggtacgggaaagtcgctt
tcccttctttgctcgactcttgcttggcagcagaactgcaagtcgaagaatcgttattct
tattttactcactctaaacccgatccgcaagccctagttgatcctattggtcacggtggt
ggatttattcctgaaacgcagccttcagggaacccggatacagctccacctgctgcaagt
aatgggacgaaaaagaaaaaaccggcacctaccatcttttatgcctcgaggacacattca
caaattactcaagtgattcgggaatacagaaagacaagttatcgggtgccaatggctata
ctggcttcacgaaaacactactgtacaaatgtgaatgtacgaggtcaagacaacattgat
gaacaatgcaagttgttattaaaggatcaggaggctggatgctcagaattcaaaaatgct
cacaaagtaaaaggtcatccatccattcagaaaggagggtgccacgaggctcatgatatt
gaagatcttgttaaagttggacaaattgtcaaaggctgttcttattttggagcacgttcc
ctggctgatgatgcggagttagtgttctgtccatacaactatatcatcaatccagttgtt
agaagagcaatggaagtaaatataaaaggagccatcattattatcgatgaagcccacaat
attgaagacatttgtcgtgatgctggtagtgttgatgttgaggaggatattttgcttcag
ttgcagatggaactggagcaactcatacaatctgatacaatgatttaccaacctttggta
gaaatgacgcaggacataaggagttggattgctaggaagaaaaatactttagaaaagcac
ggtttccaacactatgcctcatgttggactggtgacaaggccttgaaagagctacaagaa
gccaatgtgacgaagcagtgctttccaattttacaggaatgtgcctcaaaggccatcaaa
gctgcctctgaagcagagccagggacagatcatttgagtggcatggcagcatctgtatta
gaaggactagtctcctcacttagttacttcttctcgggagatgggcttcatgtgtgtgat
tatcagctagctttacaacactatgtcaagaaaagtcctggaagtgctgttggtagctgg
acacaaacttttagtttgtggtgcctaaatccagcagttgtattcagagaaattgctgat
tcttgtctatcagtgatcctaacatcagggactctatcaccaatggattcattttcctct
gaacttggtgttacttttggtacttctctggaagctccacatgttatagacgttgaatca
cagttatgtgctgctgtaatctcgagaggaccaagaaattatccgttgaatgcaagtttc
aaaacagctgattcatatgcttttcaggatgcacttggcacatctttggaggaaatatgc
aagattgttccaggtggttgtctagtattttttcctagctataagctgatggagaaacta
agcagtcgctggaaagaaacaggtcaatgggcccgacttaatgctcgaaagccaattttc
actgagccgagagggggtcaagaagaatttgaatcagttttgaatggttactacagttct
attaaccaaagggagaaactagtgatgggaagaaagaaaaaggcaaaagggtcagctctt
agtgacggtactccacttgaagtttcaaatgaaaacaagaaagagggagctgcttttctt
gctgtttgtcgaggaaaggtttctgaaggcatagacttttctgacgagaaggctcgtgta
gttataattgttgggattccctttccaaacataaatgatattaaagtcgatcttaagaag
aagttcaacaatacttataagtcatccaaaaatcttctgagtggtagtgagtggtattgt
aatcaagccttcagagctcttaaccaggctacaggtcgttgcattcgccatagatttgac
tatggagctgtgatccttttagatgaacgtttctgtgaggcaaggaatagagcttatatt
tcaaagtggttgcggaattcaataagacatcacagcagctttgacaagtcaatggaagaa
ctgaaatcctttttcagagatgtcaaagagcgtgttggcaaggcagccagttccatacaa
agttctgttgttgatattgaagaaaatgcttttgttaccaatagtataataaccaggcag
aaaaaccagaagttcggcacttctgatgtgaaagggcttaaggaggaagaaaattgtgca
ttgatttgtcaaaaagctccgctcctatgtcaatcttcatgtattgataccatgtataat
acatcctccactaaaatgagaattgatgcccctcatttgatgttaaatgatgatgaggat
tctgatggtcgcagagcttacattgattcggaatgtgattcagcattttcgtctaggttc
tctggagatccattgatagtttcacacgctgctgaccctcaattaactattgtaaaagaa
actcctgctactgatgacattattcacatttctagtcctcaatccttctccaaggatgaa
tattcttcctcaaccatcattcaagcatctagtgatctttcagaccacttggcaaatcat
tctacaactcaccaaaaaactgagttgggttgtaaatctccctgtttgacgattactcct
caaaaagatgtctatacaaaagcaaacatgatatcatttgatgttgaatcgccaattaac
tcgagcgtcaattctcatgttgggaaaaggataaaacgtctggatttgtcatccatagtt
catcttgatgcagaagaatttgatactcagatgaccaagattcccatgcatgatagttct
acatgtaaatcaaggaagattaaagatgcaaaccagatgattgattcttgttccagaatt
agtcaattagataaggaactggagaagtccaaatctccttggtcttcagtcctgaataac
tatgagacatcagtcgtgcagtctaatcttgctatgtacgaaagactacagatattttgc
tcactttgcaacaatcctctagggcttcctgagaataatttatttgttgtgtgctcacga
actttgtcaacaaaaactcacttaaagtctctttggaagggtcaaccagagacccctggt
ccgagcagacacagtatacctattctcatagctaacttttcgtctgttgatcaacgcatc
tatgaaagaaccagtgacaatttatctgttcaggggatttggtgcaaagaagatggctgt
gttttcaaaactattttctgtcccttctgtgtaaattccagacattgtcttggtgtacag
gtcatggcttcagatgcgtctaatgtccagttactaaataaggtgctgctttattgtgat
tgcttgatgataaaggagcctgacgcgtcaagaaaggaattatctccatccaacaattta
agctctgatagaggtctctcttccattgagagtttcacatttactcctgagcagcagaac
cttggaggatggagaactacaaaatccaagatgcgattaccaaaaaggagcatctcatct
agtgcacagaggtga
DBGET
integrated database retrieval system
