Solanum pennellii: 107002336
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Entry
107002336 CDS
T04130
Name
(RefSeq) DNA-directed RNA polymerase I subunit 1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
spen
Solanum pennellii
Pathway
spen03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
107002336
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spen03021
]
107002336
Enzymes [BR:
spen01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
107002336
Transcription machinery [BR:
spen03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
107002336
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
DUF6322
Motif
Other DBs
NCBI-GeneID:
107002336
NCBI-ProteinID:
XP_015055804
LinkDB
All DBs
Position
10:78482011..78507478
Genome browser
AA seq
1675 aa
AA seq
DB search
MNQGASETVEAVHFSFMTDEEVRRHSVVKVTSPNLLDGLQLPVPNGLYDPAMGPLDHYSQ
CKFCSQSNCSGHCGHIELVSPVYNPLLFNMLHNLLQRTCFYCFHFRASRAEVEKCVSELE
LIAKGDVVGAKMIDALSPDNSTDREESEGSHMSCTMDDLNVRDHCEYNKRPSWDNFQFTE
AMAVIDRILKTKTEKCSNCKAKNPKIRKPSFGRFHMDISNKQIRENYINSGRRFNLHDTG
GSEENPSPEVVNATEPLGEAETSLCVTSTDGVENSKGRKRQGGDQSDVVEQQKDSFSVAH
LPSQVRSIIEHLWENEAPLCTFFCDFQSQHRNTSGKVAGPSMFFLDSILVPPVKFRPPAK
GGDSIMEHPHTVLLGKVIQANIALGNAHINRAGRSKIISRLMDLQQSVNVLFDSKTASGP
GQKDVGSGICQMLEKKEGIFRQKMMGKRVNFACRSVISPDPYLSVNEIGIPPYFASRLTY
PERLTPWNAVKMRDAVINGPENHPGAISFADRIATVKLPSNKKMRVAISRKLPSSRGAVT
QSGRNNEYEFEGKVVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCS
TYNADFDGDEMNVHFPQDEISRAEAYNIVNANEQYIVPTKGDTVRGLIQDHIVGAVILTM
KNTFLTLHEFNQLLYGSGVFAAGPAPTSGNHSNKVSIVDFEGVVQTVLPAVWKPKPLWTG
KQVITALLNHLTNGCPPCTVKNKGKIPYAYFLSESRLVEYQSREEQEDRTAENEFLIWKN
ELVRGVIDKAQFGKFGLVHTIQELYGSNKAGILLSALSRLFTIFLQLHGFTCGIDDLVIL
PHYDIRRKEELEGDDVGEEAHCDFVKFKRGEIGPSELQLEIEKAISSNKEVATAALDMKM
KNKLANKGSQFNKELLLKGLLKPFPRNCIALMTITGAKGSTVNFQQISSYLGQQELEGKR
VPRMVSGKTLPCFPAWDCASRAGGYVSDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRS
GYLQRCLIKNLESLKVCYDYTVRDADGSIIQFYYGEDGVDVHRTSFLKNFKALKNNQETI
CQKLRHGRKLNSYIEKLPDGLGEKVKHFWESKTKKLEKKLGKLVKKEEMVKQLKEEEADF
LELVGQKYFSSLADSGEPVGVLAGQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEIL
MTASEAIKTPIMTCPFLGWKSKNDAQSLLAKVKKITVADMIESMEVKLLPLSIYNHQVSQ
LYKLTVKLKKHDFVSSEDCEYTLKFVFLRELEDAIESHLSLLSKINGIQNFKTSSESVDS
DETEENASSTRREEEMLDDDDEDEDERTEDLSSDAQKRKQQTTDEMDYDDDEDEDEAEAT
AEIEDEKSEQTDEIDNGDEEDNGDRGNEEHTSKLQSTEEDISNTKTSKSKTKTTVKQKKK
KERRSKKDSDRCVFVDVEGLHFEVHFRFVNEPHILLAQVAQKTAKKVYVKNSGKIDQCRM
VKYEVTENTVMWDENQTKQQSQDSDSAYWALKAAGVDFGTFWEMQDDLDVTRIYTNNIRA
MLNTYGVEAARASILREVKTVFGIYGVEIDFRHLSLIADFMTHTGGYQPMSRHGSISESL
SPFLKMSFETASKFIVEAAAHGLTDNLETPSSRICLGLPVKMGTGCFDIMQKLDI
NT seq
5028 nt
NT seq
+upstream
nt +downstream
nt
atgaatcagggtgcatcagagaccgttgaagcggttcatttcagtttcatgacagatgaa
gaagttcgtaggcatagtgttgtcaaagttacaagccctaatttgcttgatggattacag
ctaccagtgcctaatgggctctatgatccggcaatgggtccccttgatcattattctcaa
tgtaaattttgttcccaaagtaactgctctggtcactgtggtcatattgaacttgtttca
ccagtctacaatcccttgcttttcaatatgctgcacaatcttctgcaaagaacatgcttt
tattgcttccattttagggcatcaagagcagaggttgaaaagtgtgtttctgaattagag
ttaattgcaaagggtgatgttgttggggccaaaatgattgatgctctttctcctgataat
tctactgatcgggaggaaagtgaagggagccatatgtcatgtactatggatgatttgaat
gtgcgagatcattgtgagtacaataagagaccatcttgggacaacttccagtttactgaa
gccatggcagttattgatagaattctcaagactaaaacggagaaatgtagcaactgcaaa
gcaaagaatccaaagatcagaaaacctagttttggacggtttcatatggatatctcaaat
aagcaaattagggaaaattatatcaacagtggtcgcaggttcaatctgcatgacactggt
ggaagtgaggaaaatccttcccctgaggttgtaaatgccaccgagccgttaggggaagct
gaaaccagcttatgtgtgacttctactgatggagtagaaaattctaagggacgcaagagg
caagggggtgaccagtctgatgtggttgagcaacagaaagactcattttcagtagcacat
ttaccatctcaggtcagaagtattatagagcatttatgggagaatgaagctcctctttgc
acattcttctgtgattttcagagccagcaccgtaatacatctggcaaggtggctgggccc
tctatgttctttttggattctattcttgtaccaccagtcaaattccgacctccagccaaa
gggggtgactctattatggaacatccacatactgttcttcttggtaaggtcattcaggca
aatatagctttgggaaacgctcatatcaaccgggctggaaggtctaagatcattagccgc
ttgatggatcttcaacaatctgtaaatgtgctgttcgatagcaaaacagcttctggtccg
ggtcaaaaagatgttggttcgggcatatgtcaaatgttggagaagaaagaaggtattttc
cgccagaaaatgatggggaagagagtcaattttgcttgccgatcagttatatctccagat
ccttatttgtctgtcaatgaaattggaattccaccatattttgcttcaaggctaacctat
cctgagaggttgactccttggaatgctgttaaaatgagagatgctgtcattaacgggcct
gaaaaccatcctggcgccatctcttttgctgatagaatagctactgtgaaactaccatca
aacaaaaagatgcgtgtagcaatatctagaaaattgccttcttcaaggggagcagtgact
caatctgggaggaacaatgagtatgaatttgaaggcaaagttgtttatcgacacttgcaa
gatggggatgttgttcttgtgaatcgacagcctacgcttcacaagcccagtataatggct
cacgtagtccgcgtactgaaaggagagaaaactcttcgtatgcactatgctaattgcagt
acctataatgccgattttgacggtgatgaaatgaatgtccacttcccacaagatgaaata
tctcgtgctgaagcatataacattgtaaatgctaatgaacagtacattgttccgactaaa
ggagatacagttagaggcctgattcaggatcatattgttggtgcagtgattcttaccatg
aagaatacctttttgacccttcatgagttcaaccaactactgtatggatctggtgtgttt
gccgctgggcctgctccaacttctggaaatcattcaaataaagtttccattgtagatttt
gaaggtgttgtgcagactgtcttgcctgctgtgtggaaaccaaagcctctttggacaggg
aagcaggtcatcacagcattactaaatcatctgacaaatggttgtccaccttgtaccgtc
aaaaacaaagggaaaattccatatgcgtatttcctgagcgagagtcgcctagttgagtat
cagtcaagagaagaacaagaagatagaaccgctgaaaatgagttcttaatttggaaaaat
gagctcgtgcgtggtgtaatcgacaaggcccagtttggaaagtttggtttagttcataca
attcaggagctttatggatccaacaaagcaggcattttactttctgctctgagtcgttta
tttactattttcttgcagctgcatggtttcacttgtggtattgatgatcttgtcatctta
ccacattatgatattcggaggaaggaggagcttgaaggagatgatgttggtgaagaggct
cattgtgattttgtgaagttcaagcgtggagaaataggcccttcggagctccaactagaa
attgagaaagcaataagcagcaacaaagaagttgccacagcagccttagacatgaagatg
aaaaataaattggcaaataaaggctctcaatttaataaagagttgctgctgaaaggattg
ttgaaacctttccccagaaactgcatcgcccttatgacaattactggggcgaaagggagt
acggttaattttcaacaaatttcctcatatctgggccaacaagagttggaaggaaaacga
gtgccacgaatggtttctgggaagactttaccctgttttccagcatgggattgtgcttct
agggcaggaggttatgtcagtgatcgctttctttctggacttcgtccccaggagtactat
tttcattgcatggctggtcgtgaaggattggttgatactgctgtcaaaacatctcgcagt
ggttatctgcaaaggtgcttgataaaaaacctggaatctcttaaagtctgttatgattat
actgtccgtgacgcagatggttcgattatccaattttattatggagaagatggtgttgat
gtgcatcggactagttttctcaaaaacttcaaagcactgaaaaataatcaagaaaccatt
tgccaaaagttgcgtcacggacgcaagctcaattcatatattgagaaattgcctgatggc
ctgggagaaaaagtgaagcacttctgggagagcaagacaaaaaagttagagaagaaatta
gggaagctagtgaaaaaggaagagatggtgaagcaactgaaagaggaggaggcggacttt
ctagaactagtggggcaaaaatacttctcaagtctcgcagattcaggagagccagttggt
gtccttgctggtcagtcagtaggtgaaccttcaacccaaatgacactgaacacttttcat
cttgctggccgtggagaaatgaatgtgactcttggaattccacgtcttcaggagattcta
atgactgcctctgaggctattaagactcccatcatgacgtgccccttcctcggctggaaa
tcaaagaatgatgcccagtctcttttggcaaaagtgaagaagatcaccgtggcagatatg
attgagagtatggaggtcaagcttttgccattatcaatctacaaccatcaagtttctcaa
ctatacaagctcacggtgaagctcaagaagcatgattttgtgtcatcagaagattgcgag
tataccctaaaatttgtgttcttaagggagttggaggatgcaatagaaagtcatttgtcc
ttgctctctaaaattaatggcatacagaacttcaagacaagctcggaatcagtggattca
gatgagactgaagaaaatgcttctagcaccagacgtgaagaagagatgctggatgatgat
gatgaggatgaggatgaaagaactgaagatctcagttcagacgcacaaaaaaggaaacag
caaaccacagatgagatggattatgatgatgatgaagatgaagatgaagctgaggccact
gcagaaattgaagatgagaaaagtgaacagacagatgagattgataatggtgacgaagaa
gacaatggagaccgtggcaatgaagagcatacgtctaagttacagtctacggaagaggac
atatcaaataccaaaactagcaagtcaaagaccaaaacaactgtcaaacagaagaaaaag
aaagaaagacgtagcaaaaaggattcagataggtgtgtctttgttgatgtggagggactg
cattttgaggtccactttagattcgtcaatgaacctcatatcctgttagctcaggttgcc
caaaagactgcaaagaaagtgtatgttaagaactctggtaaaatcgaccaatgcagaatg
gtcaagtatgaagtaactgaaaatactgtgatgtgggatgaaaatcaaacaaagcagcaa
agccaagattctgattctgcttattgggccctgaaagcagctggagtggattttggtacc
ttctgggaaatgcaagatgaccttgatgttacccgtatatacacgaataatattcgtgct
atgctgaacacctatggagtcgaagctgcccgggcatcaatcttaagagaggtcaaaact
gtttttggtatctatggggtggagattgattttcgacatttgagtctaatagccgacttc
atgacccatacgggtggataccaaccaatgagcagacatggaagcatatcagagtctctg
tcaccgttccttaagatgtcgtttgaaacagcttcaaaattcatagtcgaagcagctgct
catggtttaactgacaacttggagacaccatcctccagaatttgcttagggttgccagta
aagatgggtactggttgttttgacataatgcagaagctagatatttga
DBGET
integrated database retrieval system
