Solanum pennellii: 107002448
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Entry
107002448 CDS
T04130
Name
(RefSeq) protein RRP6-like 2
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
spen
Solanum pennellii
Pathway
spen03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107002448
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spen03019
]
107002448
Messenger RNA biogenesis [BR:
spen03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
107002448
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
PMC2NT
Motif
Other DBs
NCBI-GeneID:
107002448
NCBI-ProteinID:
XP_015055970
LinkDB
All DBs
Position
10:complement(10987807..10990788)
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AA seq
861 aa
AA seq
DB search
MEIDSPEGNGEDTLSKVTSGPLPSAVTKLSGSSRGIPTDRDFHFYNNFSEFRTPISQIDK
KSKEILDKVGQLSELWGKPISCPEDPDDEESEEWLVNINDDVLEKLASSLDEFKLLRKKE
EETGMKMEDDSESGFQLVGRKKKKSEEKVKVAIKGKPKIPFHIPTIPKPQDAYKIIVNNT
NQPFEHVWLQRSEDGSRFVHPLEKFTPSDFVETAGIIEPVKPPPLEDTPFKLVEEVKDLK
LLANKLRSVDEFAVDLEHNQYRSFQGLTCLMQISTRTEDFVVDTLKLRVHIGPYLRDVFK
DHKKKKVMHGADRDIVWLQRDFGIYVCNMFDTGQASRILKLERNSLEHLLQHFCEVTANK
EYQNADWRLRPLPAEMMKYAREDTHYLLYIYDVMRMKLLSLDAGDGSPESPDDPLVEVYK
RSYDICMQMYEKELLTDTSYQHIYGLQGAGFNAQQLAVVAGLHGWRDVIARAEDESTGYV
LPNKTLTEIAKQMPLTPSKLKGMMKSKHPYVERNLGSVVSIIRASVQNSAAYEAAAEQLK
ERRLELRAEETVVATEGAEMSLEITEPPGDTSDRHNEYGGLKGTSSGQVEVTIQAIKKPS
RGLGMLLGSTAKRKMQPDKKEAEEIQVQQIKSSVSFPFHPFSGSIEQIQQAATVPAKPLE
INHRAEEPVAANCKTDVITVETDSDDGESVKGELSTGGQENSSAMPVVTSKSEDVILLET
DSDCEESGKDDSEVTNNQPECGENKNVLSVEMDEGGENTPLSINLKSKGKLAEKPQAHEG
ELKVEGFDYEAARKQVVFGEDPGKQQAEREGDESRRSRNEKGNKKDLLLGQPPKIEEAAD
FQQGRRRQAFPASGNRSYTFR
NT seq
2586 nt
NT seq
+upstream
nt +downstream
nt
atggagatcgattcacctgaaggtaacggcgaggatacgttaagcaaagtcacaagtggc
ccattgccatctgcggttacaaagctctctggttcttcaagaggaatccctaccgataga
gattttcatttctacaataatttcagcgaattcaggactcctatttcacaaatcgataag
aaatctaaggaaatcttggacaaagttgggcaattatcagagctatggggaaaacccatt
tcgtgtccggaggatccagatgatgaggagagcgaagaatggcttgtgaacataaatgac
gatgttttggagaaactcgcttcgtcgttagatgagtttaagttgttgagaaagaaagaa
gaggagactggaatgaagatggaggatgattctgaaagtgggtttcaattggttggtagg
aagaagaagaagagtgaagagaaggtgaaagtggctatcaaagggaagcctaagattcca
tttcatatacccaccatccctaagccacaggatgcgtataaaatcattgttaacaataca
aatcagccatttgagcatgtttggttacagagaagtgaggatggttctaggtttgtgcat
cctctggagaagttcactccgtcagactttgttgagactgctggcattattgagcctgtt
aaacctcctccgttagaggatactccatttaagcttgtggaagaggttaaagatctgaag
ctgttagcaaacaagctgcgttctgtggatgagtttgcagttgatttggagcataaccaa
tatagatcttttcaaggattgacatgcttgatgcagatatcaactagaactgaagatttt
gttgttgacactctgaagctccgtgtacacattggcccttatctgagagatgtttttaag
gatcacaagaagaaaaaggtgatgcatggtgctgatcgcgatattgtgtggcttcaacgt
gactttggcatatacgtatgcaatatgttcgatactggccaggcatcgagaattttaaaa
ttggaaagaaacagtctggagcatctgctacaacatttttgtgaagttacagcgaacaaa
gaatatcagaatgcagattggagattacgcccacttcctgcagagatgatgaaatatgct
agagaagatacacactatctcttgtacatttatgatgttatgaggatgaaattgctatcg
ttggatgctggcgatggatcacctgaatctcctgatgatcctctagtagaggtgtacaag
cgcagttatgatatatgtatgcagatgtatgagaaagaacttttaactgatacctcatat
cagcacatatatggattacagggagctgggttcaacgcgcagcagcttgcagttgttgct
gggttgcatggttggagggatgttattgcccgggcagaagacgaaagtactggctatgtt
ttgccaaacaaaacacttactgaaattgctaagcagatgcctcttaccccaagcaaatta
aagggaatgatgaaatcaaagcatccgtatgttgagcgtaatcttggttctgttgtcagc
atcattagggcctctgttcaaaattccgctgcatatgaagcagccgcagaacaactgaag
gaaaggcgtttagaattacgagctgaagagactgttgtggctactgagggtgctgaaatg
tcacttgaaattactgagccacctggtgacacctctgaccgtcataatgaatatggtggt
ttaaaaggtacttcctcaggacaggtggaagtaactattcaggcaattaagaaacccagc
cgtggtcttgggatgttactagggagtacagcaaagaggaagatgcagcctgataaaaaa
gaggcggaagagatccaagtgcagcagatcaagtcttcggtgagctttccgttccatcca
ttttcaggtagtattgagcagatacagcaagctgcaacagtgcctgctaaaccattggaa
attaaccatagagcggaggaacctgttgctgctaattgcaagacagatgttataaccgtg
gagactgattcagatgatggggaatcagtgaaaggtgagctatcaactggaggacaggaa
aactcctctgccatgcctgtagttacttcaaaatcagaagatgttatcttactggaaact
gattcagattgtgaagaatcaggcaaagatgactcagaagttactaacaatcagcctgag
tgtggggaaaacaaaaatgtgctttctgttgagatggatgaagggggtgagaatacgccc
ctgtcgataaatctaaaaagtaaggggaagcttgctgagaaaccacaagcacatgaaggt
gagttgaaggttgagggttttgactatgaagctgcaaggaagcaagtggtatttggagaa
gatcctggtaaacaacaggcagaaagagaaggtgatgagtctcgtaggagtaggaatgag
aaaggtaataagaaggatttattattaggtcagccaccaaagattgaagaggcagcagat
ttccagcaaggtagaaggcgtcaagcttttccagcttcggggaatcgaagctatactttc
cgttag
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