Solanum pennellii: 107002493
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Entry
107002493 CDS
T04130
Name
(RefSeq) RAB6A-GEF complex partner protein 1-like isoform X1
KO
K20476
RAB6A-GEF complex partner protein 1
Organism
spen
Solanum pennellii
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
spen04131
]
107002493
Membrane trafficking [BR:
spen04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Rab associated proteins
107002493
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RIC1
Beta-prop_EML_2
WD40_CDC20-Fz
Beta-prop_RIG_2nd
WD40_Prp19
Beta-prop_IFT140_1st
Beta-prop_VPS8
Beta-prop_IFT122_1st
Motif
Other DBs
NCBI-GeneID:
107002493
NCBI-ProteinID:
XP_015056029
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Position
1:96528960..96543942
Genome browser
AA seq
1125 aa
AA seq
DB search
MYMAYGWPQVIPMESGLCPSSQQIVYLKVINRLFLVVSPTHLELWSSSQHRVRLGKYKRS
SDSIQKEGENLRAVWSPDTKLIAVITSSFYLHILKVQFTERKIQIGGKQPTGLFLASITL
LLNEQVPFANRNLTMSNVVCDSKHIIVGLSDGSLYNISWKGEFCGALDAFDLDVQCPDGS
GVPKLANALENGLASGGSLSFSKCSHHLSKNSAVIHLEFSLPLRLLVVLFSDGQLVLCSV
SKKGLKQMESIKAEKKLGSGDAVCAAVASDQQLLAVGTRRGVVELYDIAESASLLRSVSL
YDWGYSVEDTGAVSFVAWTPDNSAFAVGWKLRGLTVWSVSGCRLMSTIRQIGLSSASSPV
VKRNQECKYEPMMNGTSLMNWDEYGYRLYAVEEGSSERIIAFSFGKCCLNRGVSGTTYVR
QVIYGEDRLLVVQTEDTDELKLLHLSLPVSYISQNWPVQHVAASKDGMYLAAAGLHGLIL
YDIRLKKWRVFGDVTQEQKIQCRGLLWLGKIVVVCNYDDSSDGYELLFYPRYHLDQSSLL
CRKPLLTKPMVMDVYQDYLLVTYRPFDVHIYHVKLSGELTPSSSPDLQLSTVRELSIMTA
KSHPASMRFIPDQLPREGIAGNGGLSTSLDLSVREPTRCLILRTNGELSLLDLDEGRERE
LTDSVELFWVTCGQSEEKASLIEEVSWLDYGHRGMQVWYPSPGADVFKQEDFLQLDPELD
FDREVYPLGLLPNAGVVVGVSQRMSFSACTEFPCFEPSPQAQTILHCLLRHLLQRDKKEE
ALRLAQLSAEKPHFSHCLEWLLFTVFEADISGSKNHSVIPNHSTSSSLLDKTCDLIRNFP
EYFDVVVSVARKTDGRHWADLFAAAGRSTELFEECFQRRWYRTAACYILVIAKLEGPAVS
QYCALRLLQATLDESLYELAGELVRFLLRSGREYEPTTTDSEKLSPRFFGYFLFPSSYRR
QTLESKGSFKEQSAHVASVKNILESHASYLMSGKELSKLVAFVKGTQFDLVEYLQRERYG
SARLDNFASGFELIGQKLQMETLQSRLDAEFLLSHMCSVKFKEWIVVLATLLRRSEVLFD
LFQHDLRLWKAYSITLKTHPSFVEYHDLLESLDEKLSSTSNLEEK
NT seq
3378 nt
NT seq
+upstream
nt +downstream
nt
atgtatatggcatatggatggccacaggtcatccctatggaatcagggttatgcccttct
tcacagcaaattgtgtacctcaaagtcattaatcgcttattccttgttgtttctcctact
catcttgaactatggtcctcctcacagcatagagtgagattgggcaagtacaagagaagc
tcggattcgattcagaaggaaggcgagaatttgcgagctgtttggagtcctgataccaaa
ttgattgcagttattacctcttccttctacctacacattctgaaggtccaatttacagaa
aggaaaatacaaattggaggcaaacaaccaactggtttgtttctagcaagcataactttg
ctcttgaatgaacaggtgccttttgctaacaggaacttgacaatgagcaatgtagtttgt
gacagcaaacatattatagttgggctttctgatggatctctgtataatatatcctggaag
ggagagttttgtggggccttggatgcctttgatcttgatgttcagtgtcctgatggcagt
ggggttcctaaactagcaaatgctttggaaaatggtcttgcttctggcgggagtttatct
ttttctaaatgcagtcatcatttgtcgaaaaactctgctgttatccatttggagttctcc
ttacccttaaggttgcttgttgtgctattttctgatggacaattggtcttatgttctgtg
agcaaaaaaggtctgaagcaaatggagtctatcaaagctgaaaagaaactgggctctggt
gatgctgtatgtgctgcagttgcttcagatcaacaactccttgctgttggtaccagaaga
ggtgttgttgagctgtatgacattgcagaatctgcttcgcttctgcgttctgtttctctt
tatgattggggatattcagtggaggacactggtgctgtcagttttgttgcatggacacct
gataattcagcttttgcagttgggtggaagttaagagggctaacagtttggtctgtttct
ggttgccgcttgatgtccaccattcgtcaaattggcttaagttctgcatcttctccagtg
gtcaaacgaaatcaggaatgtaaatatgaacctatgatgaacggtacctcattgatgaac
tgggatgaatatggatacaggctttatgctgttgaggaaggatcttcagagagaataatt
gcattctcttttggaaagtgttgtctgaacagaggagtctctgggactacttatgtccga
caagttatctacggtgaagatcggttgcttgttgtgcagacagaagatactgatgaacta
aaactcttgcatcttagcctaccagtttcctacatctctcagaattggccagttcaacat
gtggctgctagcaaggatggaatgtacttagcagctgctggccttcatggactgatctta
tatgacataagattgaaaaagtggagagtttttggagatgtcactcaggaacaaaagatc
cagtgcagaggcttgttatggcttgggaagattgttgttgtctgcaattatgatgattcc
tctgacgggtatgaattgcttttctatcccagatatcaccttgatcagagttcacttcta
tgtcggaaacctttgcttaccaaaccgatggtcatggatgtttaccaagattatcttctt
gtgacttaccgacctttcgatgtccatatttaccatgtgaagttatctggtgaactaacg
ccttcgagttctcccgatttgcagctttctacagtacgagagctatcaatcatgactgca
aagagccatcctgcatcaatgcgttttattcctgatcagctcccaagagaaggcattgca
ggaaatggtggtctgtcaacttctttggatctgtcagtccgagagcctacccgatgctta
atactaaggacaaatggagagctttcacttcttgatttggatgaggggagagaaagagaa
cttacggactccgtagagttgttttgggttacctgtggtcagtcagaggagaaagcaagc
ttgattgaggaagtttcatggttagactatggccaccgtggaatgcaggtttggtatcca
tctcctggtgctgatgtttttaagcaagaggattttttgcagttggatccggagctggat
tttgatcgtgaggtttatcctcttggtttgcttccaaatgctggagttgtagttggcgtc
tcccagagaatgtcattttccgcatgtacagagtttccatgtttcgagccatcacctcaa
gctcagactattttgcattgcctacttcgacatcttctacagagggataaaaaggaagaa
gctctaagattggcacaattatcagctgagaagccacatttttcgcattgtttagagtgg
ctcctttttactgtgtttgaagccgacatttctgggagcaagaatcatagtgttattccc
aatcattcaacaagttcctcacttctggataagacatgtgatttgattagaaattttccg
gagtactttgacgtggttgttagtgttgcaagaaagactgatggacggcattgggcagat
ttatttgctgctgctgggagatcgactgagttatttgaggaatgtttccaaaggagatgg
tatcgaactgccgcttgctatatactagtaattgcgaagcttgaaggtccagctgtaagt
caatattgtgcattgcgtttgttgcaggcaacattggatgagtctttatacgaactggca
ggggaactggtgaggtttcttctcagatctggacgggaatatgaacccacaaccactgat
tctgagaagctttctcctagattctttggatattttttgtttccttctagttaccggagg
caaactttggagtccaaaggttcatttaaggagcaaagtgcacatgttgcttctgttaag
aatattttagaaagtcatgcaagctatttgatgtctggaaaagaactgtcaaagctcgtt
gcatttgtgaagggcacgcagtttgatcttgtggaatatttgcagcgagaaagatatgga
agtgctcgtttggacaactttgcttcaggctttgaacttattgggcaaaagcttcagatg
gaaacattgcaaagtcgtttagatgcagagttccttttgtctcatatgtgctctgtgaag
ttcaaagagtggattgtagtattggccacacttttgaggcggtctgaggtcttgtttgat
ttatttcagcatgatttacgcttgtggaaagcatatagcattactttaaagacccatcca
tcttttgtcgaataccatgacttgcttgaaagtttggatgaaaaactttcatccacttca
aatttagaagaaaaatga
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