Solanum pennellii: 107002521
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Entry
107002521 CDS
T04130
Name
(RefSeq) uncharacterized protein LOC107002521
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
spen
Solanum pennellii
Pathway
spen03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107002521
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spen03021
]
107002521
03019 Messenger RNA biogenesis [BR:
spen03019
]
107002521
Transcription machinery [BR:
spen03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
107002521
Messenger RNA biogenesis [BR:
spen03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
107002521
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
Collagen_bind_2
DUF3902
Motif
Other DBs
NCBI-GeneID:
107002521
NCBI-ProteinID:
XP_015056059
LinkDB
All DBs
Position
10:complement(80279341..80290249)
Genome browser
AA seq
1064 aa
AA seq
DB search
MKSSRRSCLESDTKKPRLNEDSIGINRISNEGSFIPQRAVNSGSVAPRFRAIDSWEDPEN
SDPLCEPYQPQHQQQHQQQQQLISEYKRALAELTINSKPIITNLTIIAGENMRDAKAIAA
IICANILEIPSEQKLPSLYLLDSIVKNIGRDYIKYFAARLPEVFCKAYRQVEPSIHSGMQ
RLFVTWRKVFPPQQLQLIEKELGFTTGVNGSSSGARRDDSKAQQTAHSIHVNPKYLEARQ
CLQQPTRVKGSADDITPGGIQKPERATSVGSERSWFDLSAKFVQKEQLNERIREKTTSAA
YGDPEYVSDLSRGSGFGLRITGEKLKEEGRDKSWYNPANGKIIQRNGLDLKHGVQSLSQN
TANSDAYPQPTHSFANQSGTLMDRSWQSSDEEEYMWDDVNCADKDQRASKEPYKSGLDNQ
HPRPQNIFGLKAASEASVDSLSREDNGQESPENQISSMWSDEARHLASVRSTPDHPRGYL
TSFSGSTATNSIVGKSFQSQKDSSHEGTPSYGIAKTANLSRGTIMQPRETQGAAPPSLES
ARRQLPPSPSISTGNFNQVVNSRTSEYHTQTESHADPRMSQFSRRSNLDPRKQVPQDSLP
MTSQSAHLISSQISHTSRYNPSSVMSSFQEEHHVSFPEKIQQESPESEFSIPSQKSIVTQ
LSGFADHSGTVPSILHGSESSGQTSISSLLAAVMKSGVLNSSSSVGTPLNSRDKGPLSSQ
AGAQSPIPSGPPIQLLSSGPKAPRSVVSIQSDRNASNPPSYSQRNGERPRLPPDTAPTPI
GSESLQAPNVVNAASNPVAKLLNSLMAKGLISASKEESPTSTPPPTPPQTQFQCPPASIS
SIPGVSAPITSPTCSSQKDELSLSKPAAKIPDALPQSNKEEREDAFKPGVIRESNPAVIS
ELLDDVPHQCGICGLRLKLRLQLDRHLEWHALRNPDGKLLHCERRWYLNFGEWIAGTGNV
PHSGILAGPTGGSNKLSECTEVMVPADESQCVCVLCGQVFEDFYDEKSDKWMFKGAIYMD
DSLNESGIQNCIVHENCTSEGSQNWMLKDDIKQESEDWFSDFMD
NT seq
3195 nt
NT seq
+upstream
nt +downstream
nt
atgaagagttctcgtagatcatgtctggaatcagatacaaaaaaacccagattaaacgaa
gattctattggaatcaatcgcatttcaaatgaagggagttttatcccacaacgggctgtg
aattcaggctctgttgccccgaggtttcgggcaattgatagttgggaagatcctgagaac
agtgatccactctgtgaaccttaccagccgcaacatcagcagcaacaccagcagcaacaa
cagcttatcagtgaatacaagagagccttagcagagctcactattaattccaagccgata
atcacgaatttgactattattgctggtgaaaatatgcgtgatgcgaaggccattgctgct
attatctgcgcgaacattcttgagattcctagtgagcaaaagctgccatctctctatctt
ttggacagtattgtgaagaatatcgggagggattatatcaagtattttgctgctaggctg
cctgaggttttctgcaaggcttatagacaggtcgaaccttcgatacactctgggatgcag
cgtctttttgtaacctggagaaaagtattccctccacagcagcttcaacttattgagaag
gagcttggatttacaactggtgtcaatggctcctcatcaggagcacgtagagatgattcg
aaggctcaacagactgcacatagcattcatgtaaatcccaagtatttagaggcaaggcag
tgcctacaacaaccaaccagagtaaaaggatcagctgatgacatcactccagggggcata
cagaaaccagagagagcaaccagtgttggttctgaaagatcttggttcgatctgtctgct
aagtttgttcagaaagagcagttgaatgagcgaatccgtgagaaaactacaagtgcagca
tatggagatcctgaatatgtttctgatttgtcaaggggttctggctttggattaagaata
acaggtgaaaagctaaaggaagagggacgtgataaatcttggtacaatcctgcaaatggt
aagataattcaaagaaatggcttggaccttaagcatggagtccaaagtctatctcagaat
acagcaaactctgatgcatatccacaaccgacacactcctttgccaatcagagtggtaca
ttgatggatcggagttggcagagttctgatgaagaggagtatatgtgggatgatgttaat
tgtgcagataaagatcaacgagcatccaaagaaccatataaatctggcttagataatcaa
catccgagaccccaaaacatatttgggttaaaggctgcaagtgaagcctcggttgactct
ctttccagagaagacaatggccaagaatctcccgagaatcaaatatcatcgatgtggtca
gatgaagctaggcatttggcttctgttcgaagtactccagatcatccaagaggttatcta
acctctttcagtgggtcaacagcgacaaactccatagttgggaaatcattccagtcacag
aaagattcaagtcatgaggggacaccaagttatggaatagcaaagactgcaaatttatct
aggggaaccataatgcaaccgcgagaaactcagggagctgcccctccatctttagagtca
gcgaggcgtcagcttcctccgtctccatcaatctcaaccggcaattttaatcaagtagtt
aacagtcgtactagcgagtatcatacacagactgaatctcatgcagatccaagaatgtct
cagttttcaaggaggtcaaatttagatccgcgtaagcaagtcccccaggactctctgcca
atgacatcgcagagtgctcatttaattagctcacagatatcacatacttcaagatataat
ccatcttccgtgatgtcatcttttcaagaagaacatcatgtctcttttcctgaaaaaatc
cagcaagaaagtcctgaatctgaattttccattcccagccagaagtcaatagtcactcag
ctttctggttttgctgatcattctggcactgtgccttccattcttcatggctctgaatcc
tcaggtcaaacgagtatcagtagtctgttggctgctgttatgaagagtggagtacttaat
agtagctctagtgtcggcacaccactaaattctcgtgataaggggcctctgtcatcccaa
gccggtgcacagtctcctataccaagtggtcctcctatccaacttttgtcatctggacca
aaggctccacgttctgttgtgagcatacaatcggacagaaatgcttcaaatcccccaagt
tattcccagagaaatggagaacgaccacgactgccacctgacactgctccaactccgata
ggtagtgaatcattgcaggctccaaatgtggtgaatgctgcttctaatcctgttgcaaaa
cttttgaattcattgatggcaaagggattgatatctgcgtcaaaggaggagtctccaact
tcaactcctccaccgacacctccacaaactcagttccagtgtcctcctgcaagcatcagt
tcaattcctggtgtatctgctccgattacctcacccacctgctcgtctcaaaaggatgag
ctgtctctctctaaacctgctgctaaaatccctgatgcactacctcagtccaacaaagaa
gagagagaagatgcatttaaaccaggtgtaattcgggagtccaatcctgctgtcatcagt
gaacttcttgatgacgttccacatcaatgtggcatatgtggtcttcgacttaagctccga
ctgcagctcgatagacacttggaatggcatgcattaaggaatccagatgggaaactgttg
cattgtgaaaggaggtggtatttaaattttggggaatggattgctggaactggtaacgtc
ccacactctggtatattggcaggaccaactggaggttctaacaaactatcagaatgcact
gaggttatggttcctgctgatgaaagtcagtgtgtatgtgtcttgtgtggtcaggttttt
gaagatttttatgatgaaaagagtgacaagtggatgttcaaaggagctatttacatggat
gattcattgaacgaaagcggtattcagaattgtatagtccatgagaactgtacatcagag
ggttctcaaaattggatgcttaaggatgatataaaacaggagtcggaagactggttttct
gatttcatggattaa
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integrated database retrieval system
