Solanum pennellii: 107002561
Help
Entry
107002561 CDS
T04130
Name
(RefSeq) serine/arginine-rich splicing factor SR45 isoform X2
KO
K14325
RNA-binding protein with serine-rich domain 1
Organism
spen
Solanum pennellii
Pathway
spen03013
Nucleocytoplasmic transport
spen03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
107002561
03015 mRNA surveillance pathway
107002561
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spen03019
]
107002561
Messenger RNA biogenesis [BR:
spen03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
107002561
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
RRM_ACIN1
Nup35_RRM_2
RRM_5
Motif
Other DBs
NCBI-GeneID:
107002561
NCBI-ProteinID:
XP_015056109
UniProt:
A0ABM1FFF2
LinkDB
All DBs
Position
10:complement(510039..516740)
Genome browser
AA seq
416 aa
AA seq
DB search
MAKPGRGRAASPSGSSSRSRSRSRSRSRSYTPSNSRSSSSRSPSRSRSRSGSISSSSSAS
RSASSRSPSRRPPSQRKSPAGVSKRGRSPPPPPESKKASPPPRKVSPIPESRVIHVDQLS
RNVNENHLKEIFGNFGEILHVQLAIDHVVNLPKGFAYVEFKTRIDAEKAQLHMDGAQIDG
KVVHARFTLPERKKAASPPRAVATSSRRDAPRTDNAPVDVEKDGPKRQQELSPRRKPASS
PRRSPIGRRGSPRRGPDSPVRRRANSPFRRGSPPPHRRRPASPMRRRSPSPPLRRHRTPP
RGSPRRIRGSPVRRRSPLPPRRRSPRRARSPPRRSPIGRRSRSPIRRPLRSRSRSISPRR
GRGPAARRGRSSSYSSSPSPRKGPRKISKSRSPKRRPFRGRSPSNSNSSSSPPRKP
NT seq
1251 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaaccaggtcgaggccgtgcggcttcaccgtcaggctcgtcttctcgttcccgt
tcccgttcccgttcacggtctcgttcttacactccttcaaactctcgctcctcaagttcg
cgttctccatctcgatctagatcccgctccggatcaatttcttcatcttcctctgcttcc
cggagtgcaagttctcgcagccctagtcgtcgccctccatctcaacgaaaaagccctgct
ggagtatctaagcgaggccgctcgccgccgccaccaccagagtctaagaaagcttctcca
cctccaaggaaagtgtctcctatacctgagtcgcgtgtaattcatgtggatcaactcagc
aggaatgtcaatgaaaaccatttgaaagaaatatttggtaattttggtgaaattctgcat
gtgcagttggccattgatcatgttgttaatcttcccaaagggtttgcttatgttgagttc
aagactagaattgatgctgagaaagcccaactacacatggatggtgctcagattgatggg
aaagtagttcatgccaggtttacccttcctgagcgaaagaaggctgcctcacctccaagg
gctgttgcaacttcctcaagaagagatgctccgagaactgataatgcccctgttgatgtg
gagaaagatggaccaaaacggcaacaagagttatctcctcgtcgaaagcctgcctcttca
cctcggaggtcccctataggacgaagagggtctcctagacgtgggccagattctcctgtt
cgccgtcgagcaaattctccttttaggcgtggcagtccaccgccccacaggaggaggcct
gcatctcccatgaggcgccgttcaccatcccctccactaagacgtcatcggacacctcct
aggggctctcccagaagaattcgtggcagtcctgttagaagacgttctccccttccgcca
aggcgacgttctccacgacgtgctagaagtccacccagaagatctccgattggtcgtcgg
tcccgttcacctattagaaggcctctccggtcacgatcaagatccatttctcctaggcgg
ggaaggggtccagctgcaagacgtgggaggtcatcatcctactcttcttctcccagtcct
cgcaagggaccccgcaagatttcaaagagtcgcagtcctaagagaaggccttttagaggt
aggagccccagcaacagtaacagcagcagttcgccacctcgtaagccctag
DBGET
integrated database retrieval system
