Solanum pennellii: 107002833
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Entry
107002833 CDS
T04130
Name
(RefSeq) transcription initiation factor IIF subunit alpha
KO
K03138
transcription initiation factor TFIIF subunit alpha
Organism
spen
Solanum pennellii
Pathway
spen03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
107002833
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spen03021
]
107002833
Transcription machinery [BR:
spen03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIF
107002833
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIF_alpha
zf-C3HC4_3
DZR_2
Motif
Other DBs
NCBI-GeneID:
107002833
NCBI-ProteinID:
XP_015056500
LinkDB
All DBs
Position
11:complement(5138437..5146192)
Genome browser
AA seq
537 aa
AA seq
DB search
MSIDLILKPSCSRCGSSSDLYGSSCKHLTLCLSCGKNMAETRDKCYECGTPVTRLIREYN
VRACSSNDKNHFIARFASGLPKFSKKKNDSKWTLQKEGLQGRQVTDTLREKYKNKPWLLE
DETGQFQFHGHLEGAQSAQYYLLMMQGEELFAIPAGSWYNFNKVAQYKQLTLEEAEEKMK
NRRKTADGYQRWMMKAANNGPAAFGEVERFDDKEGGSGGTRGRKKTSGDEDEGNASDHGD
EDEEEEAARKNRLGLNKRGIDDDEEGPRGGDLDLDDDDIEKGDDWEHEEIFTDDDEAVGN
DPEEREDLAPEIPAPPEIKQDEDDEEEGEEEGGGLSKSGKELKKLLGKANGLNESDEDDD
DDDDTEEDISPVLAPKPKEAPKEEPVETNSPLKPAASGSNRGTPTSKSAKTKRKANGDES
KPTSGAPLKKVKTETDAKPGKDETPSSTKNSALPKGASSSSKTAPSSATGPVTEDEIRAV
LLQRKPVTTQDLVSQFKSRLKCKEDKAAFAEVLRKISKIQKTTTGSSYVVLRERTNQ
NT seq
1614 nt
NT seq
+upstream
nt +downstream
nt
atgtcgatagatttgattctgaaaccttcatgtagcaggtgtggttcatcctcggatctg
tatggaagctcatgcaagcatttgactctctgtttgtcttgtggtaaaaacatggctgag
actcgtgataagtgctatgagtgtggaactccagttacacgattgattcgagagtataat
gtccgggcttgctccagcaatgacaagaaccatttcattgctagatttgcttcaggctta
ccaaaattttcaaaaaagaagaatgacagtaaatggactttacaaaaagaaggtctgcaa
ggacgtcaagttacagatactttgcgggagaagtacaagaataaaccatggctattagag
gatgaaactggtcaatttcagtttcatggtcatctcgagggagcacagtcagcacaatat
tatctgctgatgatgcagggtgaagagttatttgctattcctgctggttcttggtataac
ttcaacaaagtagcccaatataagcaacttactctggaggaagcagaagagaaaatgaaa
aatagaagaaaaactgctgatgggtaccagagatggatgatgaaagcagcaaataatggg
cctgctgccttcggtgaagtagaaagatttgatgacaaagaaggtggatctggtgggaca
agggggcgtaagaaaacttctggtgatgaggatgaaggcaatgcatcagaccatggggat
gaagatgaggaagaggaggctgctaggaaaaacaggttaggactcaacaaaagaggcatt
gatgatgatgaagagggtcctagagggggcgatcttgaccttgatgatgatgacattgaa
aaaggggatgactgggagcatgaggagatttttacggatgatgatgaagctgttgggaat
gatcctgaggagagggaggatttggctcctgaaattcctgctcctccagagattaagcag
gatgaagatgacgaggaggaaggtgaagaagagggaggtggtctgagcaaatctggaaag
gagctgaaaaagttgcttggaaaagccaatggattgaatgaatcagatgaagatgacgac
gatgatgatgatacagaagaagatatttcacctgtattggctcctaagccgaaggaagca
cctaaagaagaaccggttgagaccaacagtcctttgaaaccagctgcttctggatccaac
cgtggaactccaacttcaaagtcagctaagactaaaagaaaagctaatggagatgaatcg
aaaccaactagtggtgctcccttgaaaaaagtgaaaacagagacggatgccaaacctggg
aaggacgaaaccccatcttccacaaagaacagtgctcttccaaagggtgcatcatcctct
tccaaaactgctccaagttcggccacaggtcctgttactgaagatgaaattagagctgtt
ctactgcagagaaaaccagtgaccacacaggatcttgtcagccaatttaaatctcgtttg
aaatgtaaagaggataaggctgcttttgctgaagtattgaggaagatctccaagatacag
aaaactactacaggaagtagctatgtcgtgttacgagagaggacaaatcaataa
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