Solanum pennellii: 107003012
Help
Entry
107003012 CDS
T04130
Name
(RefSeq) E3 ubiquitin-protein ligase COP1-like isoform X1
KO
K10143
E3 ubiquitin-protein ligase RFWD2 [EC:
2.3.2.27
]
Organism
spen
Solanum pennellii
Pathway
spen04120
Ubiquitin mediated proteolysis
spen04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
107003012
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
107003012
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
spen04121
]
107003012
Enzymes [BR:
spen01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
107003012
Ubiquitin system [BR:
spen04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
107003012
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
107003012
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_TEP1_2nd
Beta-prop_RIG_2nd
WDR55
Beta-prop_EIPR1
Beta-prop_DCAF4
WD40_MABP1-WDR62_2nd
zf-C3HC4_2
EIF3I
Beta-prop_WDR90_POC16_2nd
zf-C3HC4
WD40_MABP1-WDR62_1st
Beta-prop_TEP1_C
Beta-prop_WDR19_1st
Beta-prop_HPS5
Beta-prop_EML
Beta-prop_CAF1B_HIR1
zf-C3HC4_3
WD40_RFWD3
zf-RING_2
WD40_like
zf-C3HC4_4
Beta-prop_WDR75_1st
zf-RING_UBOX
Beta-prop_SCAP
Beta-prop_WDR35_TULP_N
Beta-prop_DCAF12
Beta-prop_IFT140_1st
zf-RING_5
U-box
Beta-prop_IFT122_2nd
DUF1664
zf-Nse
zf-rbx1
Motif
Other DBs
NCBI-GeneID:
107003012
NCBI-ProteinID:
XP_015056741
LinkDB
All DBs
Position
11:complement(4970350..4976054)
Genome browser
AA seq
675 aa
AA seq
DB search
MGGGGGGEGNLMGVLVPTVNAGETSAPAAGTEVVVVVTEEEEVDKDILCPICMQIIKDAF
LTACGHSFCYMCIVTHLQNKSDCPCCSHYLTTNHLYPNFLLNKLLMKKSARQMAKSATPV
EQLRQAIQQGCEVSVKELDSLLSLLMDKKRKMEQEEAETNLQILLEFLQCLKKQKVEELN
EIQNDLQYIKEDINAVEKRRIELHRTRGRYSAKMRTLVDDSSAMTVRPPLRDKGSGAIVS
SPVNLQEQGRAGTSQTRNTDTGAPRNSQIVQRKDDNHGGSDSQDPNQPGKSLARKRRVHA
QFNELQDCYLQKRRYWARQSQKQGERVANIKNREGYSAGLEDFQSVLSTFTRYSRLRVVA
ELRHSDIFHSANIVSSIEFDRDDELFATAGVSRRIKVFEFSSVVNEPADAQCPVVEMSTR
SKLSCLSWNNYTKNHLASSDYEGIVTVWDVTTRQSVMEYEEHEKRAWSVDFCRTEPSMLV
SGSDDCKVKVWCTKQEASVLTIDMKANICSVKYNPGSSAHIAVGSADHHVHYYDLRNISQ
PLYIFSGHRKAVSYVKFLSNYELASASTDSTLRLWDVNENVPLRTFKGHTNEKNFVGLTV
NSEYLACGSETNEVFVYHKAISKPAARYRFVSDDQNDPDGDMGSFFISAVCWKRDSPTIV
AANSQGTIKALVLAA
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atgggaggaggtggaggaggagagggtaatttaatgggagttctagtgccgactgtgaac
gccggtgaaacttcagctccggcggctgggacggaggtggtggtggtggtgacggaggaa
gaggaggtggataaggatatattgtgtccgatatgtatgcaaattatcaaggatgcgttt
ctaacggcgtgtggacatagtttttgttatatgtgtattgttactcatttgcagaataaa
agtgattgtccttgttgttctcattatttgaccacgaatcatctttatcctaatttcctt
cttaataagttattgatgaagaaatctgctcgccaaatggccaaaagtgctacacctgtg
gaacaactgcgccaagcaatacaacagggatgcgaggtgtctgttaaagagctggatagt
ctattatcgcttcttatggacaagaaaagaaaaatggaacaagaagaagctgaaacaaat
cttcagattctgctcgagtttctccagtgtttaaagaagcaaaaagttgaagagcttaac
gagatccaaaatgatctccagtacatcaaagaagacataaatgctgtggagaagcgtaga
atagagttacataggacaagaggtagatattctgcgaaaatgagaacgctagtagatgat
tcatctgcaatgacagtcaggcctccattgagagataagggaagtggtgcaattgtttct
agtcctgttaacttacaagaacaaggtcgtgctggcacttcacagaccaggaatactgat
acaggagctcctcggaattcccaaattgtgcaacggaaggatgacaaccacggtggatca
gattcacaggaccctaatcaacctggaaagtcattagcaaggaaacggcgcgttcatgca
cagttcaatgagcttcaagactgttacctacaaaagaggcgttattgggcaagacagtcg
cagaaacagggagaaagagtagcaaatatcaagaatagagaaggttattctgcgggactt
gaggattttcaatctgttttgtctacctttacgcgatacagtcgtctgcgggttgttgct
gaactcaggcattctgacatttttcactcggccaatattgtttcgagtattgaatttgac
cgagatgatgaattgtttgctactgctggggtgtcacgaagaattaaggtcttcgagttt
tcatcagtggtaaacgaaccagctgatgcgcaatgtcccgttgttgaaatgtctacccga
tctaaactaagttgtttgagttggaacaactacactaaaaaccacttagcaagcagtgac
tatgagggcatagtaacggtttgggatgttacaactcgtcagagtgtgatggagtacgag
gagcatgaaaaacgagcatggagtgttgacttttgtcgtactgaaccttctatgcttgta
tctggtagtgatgattgcaaggtcaaagtttggtgtacgaagcaggaagctagcgttctt
accattgacatgaaagctaacatttgctcggtgaagtataatcctggatccagtgctcac
atagctgtgggttctgcagatcatcacgttcactattacgacttgagaaatattagccag
ccactatacattttcagtggacaccgtaaagctgtttcatatgtaaaatttctatcaaac
tatgagctagcttctgcatcaaccgatagtacactgcgtttgtgggacgtcaatgagaat
gttccactgcgtacgtttaaaggacatacaaacgagaagaactttgtcggtcttacagta
aacagcgaataccttgcatgtggaagtgagacaaatgaagtctttgtctaccacaaggcg
atttctaaaccagcagctcggtacagatttgtttctgatgatcagaatgatccagacggg
gacatgggatcatttttcatcagtgctgtttgttggaaacgtgacagcccaacaattgtt
gcagcaaacagtcaaggtactataaaagcacttgttcttgctgcttga
DBGET
integrated database retrieval system
