Solanum pennellii: 107003069
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Entry
107003069 CDS
T04130
Name
(RefSeq) uncharacterized protein LOC107003069 isoform X1
KO
K24155
rabconnectin-3a
Organism
spen
Solanum pennellii
Pathway
spen04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
107003069
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
spen04131
]
107003069
Membrane trafficking [BR:
spen04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
107003069
Endosome - Lysosome transport
Acidification regulators
Rabconnectin-3 complex
107003069
RAVE complex
107003069
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rav1p_C
WD40_Prp19
WD40
WDR55
WD40_WDHD1_1st
Beta-prop_EML
Beta-prop_EML_2
WD40_CDC20-Fz
Beta-prop_IFT140_1st
EIF3I
ANAPC4_WD40
Beta-prop_TEP1_C
Motif
Other DBs
NCBI-GeneID:
107003069
NCBI-ProteinID:
XP_015056806
LinkDB
All DBs
Position
1:complement(97479555..97501802)
Genome browser
AA seq
2515 aa
AA seq
DB search
MESHKISCCNIDDDVVSKLPLQMIESEIIPPAPNRSKSPSEFEPAIDWQPNFAGYSWIAY
GASSLLVIRQFPNPLSQTETVVGTVFQQVLELSIDGTGTVSAVAWSPVTPSSGDLAAALD
NCIGLFSYDSDASHSSFCWSQTSILVQSTKVDSITWTGSGDGIISGGIELILWRKKERSW
EIAWRFKPELPQTLISATWSIEGPFAAAPPYRLHFEGSGSHIHAGNKCVLVCQRDADSRH
LEATLPHPLPVSMIQWRPSTITHSTRDDKYSSRLVLLTCCLDGATRLWTEIDDGRVRKVG
KDGNEHKMNKFSFRVIAVVEVNQALNGRLGLDVSVRWAADINGIITVNGEAVSYASPDEH
QHGNASRCEWLVALGPQTTLTFWAIHCLDDFSPLRAPRVTLWKRKELNSPKEMPRGLLLN
KIFIMRNQVFGPPTVCSFINLLPNNYLAWMQFYSSKFPSGAKVSSELISTEDSTPNKCQS
ECLLSLCATGLSNTDSHSNKILQVAVHPCLSELEIASSLDTDGKLLFWLFSSASNTILGL
PNLSPSWKLFGKGATALPRPKYTSLSWAPTLLSEERILVIGHADGIDFLLVKALKAEELE
MVCHKICTIPLTAGSQEEGPDSVFSIPLPATCNKTFISNSFLLLAVWKKGFQALSWKIYL
HHYDLSGSRCGCSFDSTNTFQDNIWKFESSYSGKTYLVSVEPCSSAFPDPHHHNKISSSA
VICPTNSGFSEEIFANNLYSNYFAYHMVTGCVDGSLQLWRSVPAVSSNSQWDLVGTVALH
QGPISAVSASICGRKIATISKEGTVSASTTIHIWECVRVEGTGSFILEDTLYFDGDVVAS
NWLTIGNGQFLLGVCSRDKLHVYAQKRCGGQCNLEPEKSLEGNIWLRLATRHTNPTIQDF
FWGPKTMIVVVHDEYISVFSKFLYFMDKKLLPQLGAEVCEESSICQCGSNKVPVFDGHEN
CDNAQRRSDFLLNMDVVNETSLFSSMTKSQDSSTSVKNGIWSILEIAELVGGSLPLVHPE
AFLVNLLSGNWKRSYVALQCLSKHVTSTKLSAKICCRRAFSGLIFPISLSNYLEGNVLSS
SDEKSFQWGGPLDSSSWGYAASDNALSISSARSAITDFIEAVDKLQKFATISATEMMQIR
AAIHLLDEVSNMQSTSAYNSLDGPGRRFWVSVRFQQLYFGQRFGRLPSEGELVVNSGLIG
WAFHSDCQENLFDSLLSKQPSWQEMRDMGVGLWYTSVAQLRLKMEKLARQQYLKNKDPKA
CALLYIALNRLQVLAGLFKISKDEKDKPLVAFLSRNFQEDKNKAAALKNAYVLLGKHQLE
LAIAFFLLGGDTTSAVTVCAKNLGDEQLALVICRLVDGYGGTLERCLISKILLPSALAKV
DYWLASVLEWMLGEYSQAYLRMLAYPTGSLNGKCIFSSCQPAFLDPNIGDFCLMLAAKTT
MKNAIGEQNAASLSRWAILMRATALSRCGLPLEALECLSSSVSVTGDSYRRSLPDNVDSG
CLHEMLSALLNETSSNWLSLDVALQIDSHMRSDLSMQYMSKMLKRHPSWVDNDMTCLQEQ
MCTVSENQEYKLLIEAFQDELMTTIASFQLKFSLVPLHLIYSIFLSFCNRGLAYIGCHLL
CDYINKYLSSEQDSGLDGCSLYPCLPELFLRVSGELFYIFARYIIMCSMDCFYMKSFTFR
SDRADENIYCAIPELYKRRLCWSFWCIRAMMQFSSVSCTENFVGTHFTVLDLSEYLLLFA
SAWVQRNFGDLILIVKPLLMTKISEQTDIKDIQKLLRESLRMMASDLPNHAAGSSVQNKN
LMPQAQFGDVILSVPEERWHVMVASFWGRVFSLLKPKLNQLCPELEESGLFLPSGRHPSI
STSSILLDGNNVSTHNGMVPGFLAKILMVTCAHISSYCVNQFASVLLESIDTGATALFCS
EDNQSKHKALDTKLSHSNNDLDKVTGEDQLSAFEALWDLCSELKKVNQDFVLQDQKCLQH
TLHKSFKGWSEMYPSIVRECEVDETYDREERLGSPSSAAGSPLACLSPNNHPFQSFGGKD
THHTKKVLPFRSPIEIYKRNGELLEALCINSIDQHEAALASNRKGLLFFKREDGLPCGNK
ADNVWAEADWPHNGWAGSESTPIPTCVSPGVGLGSKKGTHLGLGGATVGTGFLARPTFGL
PGYSNTGGSSLGWGVQEDFDDFLDPPATTENVRTRAFSAHPSRPFFLVGSSNTHIYLWEF
GKDRATATYGVLPAANVPPPYALASVSAVKFDHCGHRFVSAASDGTVCTWQLEVGGRSNV
RPTESSLCFNNYTSDVTYVTSSGSIIAAAGYSSSGVNVVIWDTLAPPATSRASIMCHEGG
ARSLAVFDNDLGSGSISPLIVTGGKGGDVGLHDFRYIATGKTKRQKHTEIGDHGVNSMVD
TQKKTGDQNRHGMLWYIPKAHAGSVTKISTIPHTSFFLTGSKDGDVKLWDAKSAKLVFHW
PKLHERHTFLQPSSRGFGGVVQAGVTDIQIVSHGFLTCGGDGTVKLVMLNDHLGL
NT seq
7548 nt
NT seq
+upstream
nt +downstream
nt
atggagagtcacaaaatcagttgctgtaacatagatgacgacgtcgtttcgaagttacca
cttcagatgattgaatcggagataattcctccggcaccgaaccgatcaaaatctccttcc
gaattcgagccagcaattgactggcagccgaacttcgctggctactcatggatcgcctat
ggtgcctcgtctctccttgtgatacgtcaatttcctaaccctctatcacaaactgagact
gtagtcggcacagtttttcagcaggttctcgaactgtcaatagatggcactggtactgtt
tccgccgtagcttggtcccctgtgacgccttcttctggagacctcgctgccgcactcgat
aactgcattggattgttctcttacgactctgacgcttctcatagttctttttgttggagc
cagacatcaattctagtacaatctacaaaagtggactcaatcacttggacggggtcagga
gatgggataatttcaggtggcattgagttgatcttatggagaaagaaggagaggtcatgg
gaaatagcttggagatttaaaccagaactgcctcagactctaatttctgctacttggtca
attgaaggaccttttgctgctgcacctccatatagattgcactttgaaggttcgggttcc
catatccatgcaggaaataaatgtgttttggtatgtcaaagagatgcagattccagacat
ttagaagctacgctaccacacccattacctgtttctatgattcagtggagaccatctaca
attacacattcaactagagatgacaaatattcaagcaggttggtgttattaacatgctgc
ctagatggagctacaaggctctggactgagattgatgatgggagggttagaaaagttggc
aaggatggtaatgaacacaaaatgaataaattctcctttcgtgttatcgctgtagttgag
gtaaaccaagcattaaatggaagactgggcttggatgtatctgtaagatgggcagctgat
attaatggtataataactgttaatggtgaggctgtgtcttatgcttcaccagatgaacat
caacatggcaatgctagtaggtgtgaatggttagttgctttaggtccccaaacaacactg
actttttgggccattcattgtctcgatgatttttctcccctgagagccccaagggtgaca
ttgtggaaaagaaaagagttgaacagtcctaaagagatgccaaggggattgctcttaaat
aaaatctttattatgagaaatcaggtctttggtccaccaacagtatgttcttttattaat
ctattaccgaataactatctagcctggatgcaattttactcctcaaaattccccagtggt
gcaaaagtatcttcagaactgattagcacagaagattcaacgccaaataaatgtcagagt
gaatgtttgttatcattatgtgcaacaggactttcaaatacggacagtcacagcaataaa
attctgcaggtagcagttcatccttgtttatcagagttggaaattgcttcctctttggac
actgatggaaagctccttttttggttgttttcttctgcttcaaatactattttgggcctc
ccgaatttgagtccatcttggaaactttttggtaaaggtgctactgcactccctcgaccc
aagtatacaagcttaagctgggctcccactctgttaagtgaagaacgaattctcgtcatt
gggcatgcagatggaatagatttcttattagtcaaggctttgaaagctgaagaattggaa
atggtctgtcacaaaatatgtacaataccacttactgctggaagtcaagaagagggacca
gacagcgtcttctcaattcctttgcctgccacttgtaacaaaaccttcatttccaatagc
tttttgctgctagctgtgtggaagaaaggctttcaggctttatcgtggaaaatttacctt
catcactatgatttgtctggaagtcgctgtgggtgcagttttgacagtacaaacaccttc
caggacaatatatggaagtttgagagtagttattctggtaagacgtaccttgtttctgtg
gaaccttgttcatcagctttcccagaccctcatcaccataataaaatttcaagttctgct
gtgatctgtcccacaaactctggattcagtgaagagatttttgctaataatttatatagc
aactactttgcttatcatatggttactggttgtgttgatggtagtttgcaattatggaga
agcgttcctgctgtgagctcaaattctcaatgggatcttgttggtacggttgctttgcat
caaggccctatttcggctgtatctgcaagtatctgtggccgaaagattgcaactatatcg
aaagaaggtacagtaagtgcttctactactattcatatatgggaatgtgtgcgtgttgag
ggtactggcagctttatacttgaagatactttgtattttgacggtgacgttgtcgcttca
aattggttgacgattgggaatggtcaatttttacttggtgtttgctcaagagataagtta
catgtgtatgctcaaaagagatgtgggggtcagtgcaatttggaaccggaaaaatcatta
gaaggcaacatttggttgcgtcttgcgacacgtcataccaatccaaccatacaggacttc
ttttggggacccaaaaccatgatagtggttgttcatgacgaatacatttctgtatttagc
aagttcttatattttatggacaagaaacttctgccccagcttggtgcagaagtttgcgag
gagagttccatctgtcagtgtggttctaataaagtgccagtatttgatggtcatgaaaat
tgtgacaatgcacagcgtcggtctgattttctgttgaatatggatgtggtgaatgagact
tcactgtttagtagtatgacaaaatctcaagatagctctacttctgttaaaaatgggatt
tggagcattttagagatagcagaacttgtaggaggatctcttcctcttgttcacccggag
gcattccttgttaacttactttcaggtaactggaaacgttcatatgtggctctgcagtgt
ctcagtaaacatgtaacttctacaaagttatcggcgaaaatatgctgccgtcgtgccttc
agtggtttaatatttcccatttcattgtcaaactatctggaaggaaatgtcttgtcaagt
tccgatgagaagtcatttcaatggggtggacctttagattcctcaagctggggatatgct
gcatctgataatgcgctctctatctcatcagcaagatctgcaataaccgactttattgaa
gccgttgataaacttcagaaatttgcaactatatctgccactgaaatgatgcaaattcgt
gctgctattcatcttctagatgaagttagcaatatgcagtccacttctgcttataatagc
cttgatggacctggtcgtaggttttgggtttcagtgaggtttcagcagctatattttggt
caaagatttggcagactgccatcagaaggtgagctggttgtgaactcgggactgattgga
tgggctttccactctgattgtcaagagaatttgtttgattctcttttatctaagcaacca
tcttggcaagagatgcgtgatatgggtgttggactatggtatacaagtgtggcacaattg
cgattgaagatggaaaagctggcaagacaacagtatttaaagaataaagatcccaaggca
tgtgcacttctttatattgctttaaatagacttcaagtattggcgggcctttttaagatt
agcaaagatgagaaagataagccattggtggcatttctgtcacgcaattttcaggaagat
aaaaataaggctgctgctctaaagaatgcctatgtcttactggggaaacatcagttggag
ctcgcgattgctttctttttgcttggaggcgatacaacgtctgctgttactgtttgtgca
aagaatcttggggatgagcagcttgcccttgttatttgtcgtcttgttgacggttatggt
ggaacattagagcgatgtcttatttcgaaaatcctcctcccctctgctcttgcaaaagtt
gactactggcttgcaagtgttctagagtggatgttgggggagtattcacaggcttatctt
agaatgcttgcttacccaacagggtctttgaatggtaaatgtatattctcatcgtgtcaa
cctgccttcttagatccaaatattggagacttttgcctaatgttagcagccaagactacc
atgaagaatgctattggggagcaaaatgctgcttccttgagtagatgggcaatcttgatg
agggccactgccttaagcagatgcggactgcctcttgaagctttggaatgcctttcatct
tctgtgagcgtcactggtgattcatatcgacgaagtttgcctgataatgttgactctgga
tgcctgcatgaaatgctgagtgcactgctaaatgaaacttcatcaaactggctatcactg
gatgtggctttacagatagattcacatatgagatcagacttgtctatgcaatacatgtct
aagatgttaaaaagacatccaagttgggtagacaatgatatgacatgtcttcaggaacaa
atgtgtactgtatctgagaatcaagaatacaagcttctaattgaagcttttcaagatgaa
ctgatgactacaattgcgtcctttcaactgaagttctccttagttcctctacatcttatt
tactcgatcttcttgtcgttttgcaaccgtggtttggcgtatataggatgccacctgttg
tgtgactacataaataaatatttgtcaagtgagcaagacagtggacttgatggttgctca
ttgtatccttgccttccagagctatttctcagagtatctggagaactattttatattttt
gcaagatacatcattatgtgtagcatggactgtttctacatgaagtcattcacctttaga
agtgatagagctgatgaaaacatctattgtgccattccggagctgtacaagaggagatta
tgttggtcattctggtgtattagagccatgatgcagttctcgtctgtttcttgtacagaa
aattttgtaggaacacattttactgtccttgatttgtcagagtatcttttactgtttgca
tctgcttgggtacaaagaaattttggtgatcttatcctgattgtgaaacctctcttgatg
acaaaaatttctgaacagacagatataaaggacatacagaaacttcttcgtgagtctctc
agaatgatggcttctgatttacctaatcatgctgctggatcttctgttcagaacaagaat
ctaatgccacaagcgcaatttggggatgtcatattgtcagttccagaggagagatggcat
gtcatggttgcttccttttggggacgtgtgtttagtcttttaaaacccaagttaaatcag
ttatgtccggaacttgaagaaagcggtttgtttctaccttcaggcagacatcccagtata
tctacttcatcaattctcctagatggcaacaatgtctcaacccataatgggatggttcca
ggatttctggctaagatactaatggtcacatgcgctcacatctcttcttattgtgtgaat
cagtttgcatctgtcctgctggagagcatagatacaggtgcaactgcacttttctgttct
gaagataatcagtccaaacataaagcgctagatactaaacttagtcatagcaacaatgat
ctggataaggtgactggtgaagatcaattatcagcatttgaagcgttatgggatctttgt
tctgagcttaagaaagttaatcaggattttgtgcttcaagaccagaaatgtttacagcat
accttgcataagtcctttaaaggatggagtgaaatgtaccccagcattgtcagagagtgt
gaagttgatgaaacttatgacagagaagaaaggcttggtagtcccagtagcgcagctgga
tctcctcttgcttgtttgtcgccaaataatcatccttttcaaagttttggcggaaaggat
actcaccatacaaagaaggttttgccattccgtagtccgatagagatatataaaagaaat
ggagaacttttggaggctttgtgcatcaactccattgatcaacatgaagctgctcttgct
agcaatcggaagggtttattattcttcaaacgggaagatggacttccttgtggaaataaa
gctgacaatgtctgggccgaggctgactggccacataatggttgggcaggatccgagtct
acaccaattcccacttgcgtctctcctggagtgggtctggggagtaagaagggtacacac
ctcggcttaggtggagcaactgttgggacaggttttttggcaagacctacatttgggctt
ccaggttattccaatacgggtggatccagtcttggctggggggttcaagaggattttgat
gattttcttgaccctcctgcaacaacagaaaatgttcgtacaagggcattctcagctcac
ccttcaaggccttttttcttggttggatcaagcaatacacacatatatttatgggagttt
ggcaaagatagggctactgctacatatggagtgcttcccgctgcaaatgtccctccccca
tatgctcttgcctcagtatctgccgtgaagtttgatcattgtggtcacagatttgtctct
gctgcatcagatggtactgtgtgtacatggcagcttgaagtaggagggaggagtaatgtt
cggccaacagaatcatcactttgctttaataattatacatcggatgtcacatatgttact
tcaagtggttcaatcatagctgccgcagggtatagctccagtggtgttaatgttgtcata
tgggacacccttgctccaccagcaacgtctcgggcctcaataatgtgtcacgaaggaggt
gcacgctctcttgcagtgtttgataatgatttaggaagtggttctatctctccactcatt
gtaacgggtgggaaaggtggtgatgttggacttcatgacttccgctatatagctactgga
aagacaaaaagacagaagcatacagaaattggtgaccatggtgtgaattccatggttgac
acacagaagaaaaccggtgatcagaatcgtcatgggatgctctggtacataccgaaggct
catgcagggagtgttaccaaaatatctaccataccacataccagctttttcttgacggga
agtaaagatggagacgtaaaactttgggatgctaagagtgcaaaactagtatttcattgg
ccaaaattgcatgaaagacacaccttcttgcagccaagctcccgtggctttggtggtgtg
gttcaggcgggtgttacagatattcaaattgtttctcatggttttcttacttgtggtgga
gatggtactgtaaaacttgtgatgctcaatgatcatttagggctgtga
DBGET
integrated database retrieval system
