Solanum pennellii: 107003156
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Entry
107003156 CDS
T04130
Name
(RefSeq) WD-40 repeat-containing protein MSI2-like
KO
K10752
histone-binding protein RBBP4
Organism
spen
Solanum pennellii
Pathway
spen03082
ATP-dependent chromatin remodeling
spen03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
107003156
03083 Polycomb repressive complex
107003156
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
spen03036
]
107003156
Chromosome and associated proteins [BR:
spen03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
107003156
Histone modification proteins
HAT complexes
HATB complex
107003156
HDAC complexes
Sin3A-HDAC complex
107003156
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
107003156
PRC2.2
107003156
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
107003156
Heterochromatin formation proteins
Other heterochromatin formation proteins
107003156
Chromatin remodeling factors
NuRD complex
107003156
NuRF complex
107003156
NuRF complex (fruit fly)
107003156
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
WD40
CAF1C_H4-bd
WD40_Prp19
Beta-prop_EIPR1
Beta-prop_CAF1B_HIR1
Beta-prop_RIG_2nd
Beta-prop_EML_2
WDR55
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_EML
Beta-prop_WDR19_1st
WD40_MABP1-WDR62_2nd
WD_LRWD1
Beta-prop_HPS5
MIOS_WD40
Beta-prop_WDR35_TULP_N
ANAPC4_WD40
Beta-prop_WDR90_POC16_2nd
WD40_RFWD3
Beta-prop_NUP159_NUP214
WD40_MABP1-WDR62_1st
Beta-prop_DCAF4
Motif
Other DBs
NCBI-GeneID:
107003156
NCBI-ProteinID:
XP_015056913
LinkDB
All DBs
Position
1:complement(108647476..108650457)
Genome browser
AA seq
403 aa
AA seq
DB search
MAEEELEAAGETEQDVEEEFAVWKKNTPLLYDLVVCHALEWPSLTVQWLPSPTTDDGAFA
VHKLILGTHTSDDCPNFLMVANVHLPRNPASGLEHNLMNPQIPKVEIVQKIHVDGEVNRA
RCMPQKPAVVAAKTSSSEVYVFDSAKQPLDHEGGSCNPDVRLRGHDKEGYGLSWSPFKEG
FLLSGSNDQKICLWDISALPQDKVLMAHHTYEEHEDVVEDVSWHPKNENLFGSVGDDCRL
IIWDLRTNKAQHSVLAHEKEVNYLSFNSYTEWVVATASSDSTVGLFDMRKLSSPLHVFGS
HTDEVFQVEWDPNHETVLASSGGDRRLMVWDLNRIGDEQLEGEAEDGPSELLFSHGGHKA
KISDFSWNKNEPWVISSVAEDNCVQVWQMAESIYREDNGNGNC
NT seq
1212 nt
NT seq
+upstream
nt +downstream
nt
atggctgaagaagaactggaggcggcgggagaaaccgaacaagatgtagaagaagagttc
gccgtttggaagaagaacacgccgttgctctacgatcttgtcgtttgtcatgcccttgaa
tggccttctctcaccgttcaatggcttccgtctccaaccaccgacgacggtgcttttgct
gtacacaagctcattctcggcactcacacctccgacgattgccccaacttcctcatggtc
gcaaatgttcatctccctcgaaatcctgcttcaggacttgaacacaatctcatgaatcct
caaatccctaaggtagagatagtacaaaagattcatgttgacggagaagtgaatagagcg
agatgtatgccacagaagccagctgtagttgcagctaagactagtagctctgaagtttat
gtctttgactcagctaaacagccccttgatcatgaaggtgggtcttgtaaccctgatgtt
agacttcgtgggcatgataaagaaggttatggcttgtcgtggagcccgtttaaagagggt
tttcttttgagtggttcaaatgatcagaagatttgtttgtgggatatatctgcattgcct
caagataaagttcttatggctcatcatacttatgaggagcatgaagatgtagttgaggat
gtgtcatggcatccaaagaatgagaacctatttggttctgtcggagatgattgtcgtctg
atcatttgggacttacggacaaacaaagcccaacactcggttttagcgcatgagaaagag
gtgaattatttatctttcaactcatatactgaatgggttgttgctacagcatcgtcagat
agtactgttggtctgttcgacatgcgaaagcttagctctccattgcacgtgtttggcagt
catacggatgaggtgttccaggtagaatgggatcctaatcatgagaccgtactggcatct
tcaggtggtgatagaaggttgatggtctgggatcttaacaggattggtgacgagcaattg
gaaggggaagctgaagacggaccgtcagaacttcttttctctcatggcggtcacaaagca
aagatatctgatttttcatggaacaagaacgagccatgggtcatttcaagtgtggcagaa
gacaactgtgtccaagtctggcagatggctgagagcatctaccgtgaggacaatggcaat
ggcaactgctga
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