Solanum pennellii: 107003447
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Entry
107003447 CDS
T04130
Name
(RefSeq) rhamnogalacturonate lyase B-like
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
spen
Solanum pennellii
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
107003447
Enzymes [BR:
spen01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
107003447
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GFIT
Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
CarboxypepD_reg
RhgB_N
CarbopepD_reg_2
Motif
Other DBs
NCBI-GeneID:
107003447
NCBI-ProteinID:
XP_027768636
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All DBs
Position
11:4418594..4425817
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AA seq
680 aa
AA seq
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MKKEWSFVLGLLGILLQLFLLAESSLKKQNVSKKNSQQDQQDFPPVQILRLDDDYVAVDN
GIFNITFSIPGGMVTGIQYNEIDNLLENGNKDDNRGYWDLVWNKPEEKGIFDKLRATNFK
VIMEDENQVELSFTRTWDSLDSKQLSMNIDKRFIILRGISGFYCYGILERLEGWPNIDVY
QGRIVFKLKETLFQYMAISDERQRIMPTAHDREVGQKLDYKEAVLLTNPNNSFIKGEVDD
KYQYSCENKDNRVHGWISQTPRIGFWMITPSDEFRTGGPVKQDLTSHTGPVNLNMFFSTH
YAGEVLGLKFRNGEPWKKVFGPVFVYMNSLSPDEPDTLTLWTDAKEQMLVETENWPYNFP
LSEDYARADQRGLVSGRLLVRDRYVNKSPMIANSAFVGLAAPGNVGSWQLENKAYQFWTQ
TDSEGYFLIKNIIPGNYSLYAWVPGFVGDYMYDPYIIVAPGSRKRLETLMYYAPRNGPTL
WEIGTPDRTAAEFFIPDAQPKLLNQLYVVHNQERYRQYGLWDRYTEIYPDDDLVFTIGFS
NYQTDWFFAHLNRYFYNDDGNKTYAPTTWQVLFDLEDVDQSSNYTLQLALASAHEAELQV
RFNDPEIDAPHYSTGLIGKDNAIARHGIHGIYRLYTINVPGSLLGFGTNIMYLTQSRGDR
PFRGLMYDYIRLEGPSDENN
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaagaatggagctttgttcttggattactgggaattttgcttcaactatttttg
ctggctgaatcttctttaaaaaaacagaatgtatcaaagaaaaatagtcaacaagaccag
caagattttccaccagtacaaattttaagactggatgatgattatgttgcggtggataat
ggaatatttaatattactttttctattcctggtggaatggtaactggaatacaatataat
gaaattgataatttattggaaaatggaaataaagatgataacagagggtattgggatctt
gtttggaacaaaccagaagaaaaagggatttttgacaaacttcgtgcaacaaattttaag
gttattatggaagatgaaaatcaagtggagctttcattcacaaggacttgggattcttta
gattccaaacaactttccatgaatattgacaaaaggtttataatattaagaggaatttct
ggattttattgttatggaattttggaacgtttagaaggatggccaaatattgatgtttac
caaggaagaattgtcttcaagctcaaggaaacattgttccaatatatggcaatttcagat
gaaagacaaaggattatgccaacggcccatgatcgtgaagtgggccaaaaacttgattat
aaagaagctgttcttcttacaaacccaaacaattctttcataaaaggagaggttgatgac
aaatatcaatattcttgtgaaaacaaggataaccgggtccatggatggatcagccagaca
ccgcgaatcgggttttggatgattaccccgtccgatgagttcagaacgggtgggcccgtc
aaacaagaccttacttctcataccggcccagtaaatctaaatatgttttttagtacacat
tatgctggagaagtattgggactaaaatttagaaatggagagccctggaaaaaagttttt
ggccctgtttttgtctacatgaactcgctttcacctgatgagccagacactctcacactt
tggaccgatgcaaaagaacaaatgctcgttgagactgaaaattggccgtataatttccct
ctctcggaggattatgctcgagctgatcaacgtggtcttgtaagtggcagattgctcgtt
cgagatagatacgttaacaaaagtcctatgattgcaaactcagcttttgttggactggct
gctccaggaaatgttggatcttggcaattagaaaataaggcttatcaattttggactcaa
acagatagtgagggttatttcttgatcaagaatattattccagggaactatagtttatat
gcttgggtgcctggatttgttggagattacatgtacgatccgtacattattgtcgcccca
ggatcaagaaaaaggttagaaactcttatgtattatgctccaagaaatggtccaacattg
tgggaaattggaactcctgatagaacagctgctgaatttttcatccctgatgcacaacca
aaactcttgaaccaattatatgttgtacataatcaagaaaggtataggcaatatggatta
tgggataggtatacagagatataccctgatgatgatttggtgtttactattggatttagt
aactatcaaacagattggttctttgctcatctcaatagatatttttacaatgatgatggg
aacaagacttatgcacctacaacatggcaagttctatttgatcttgaagatgttgatcaa
tcatcaaactatactcttcaactagcattggcctcagcacatgaagctgaattgcaagtt
cgattcaatgatccagaaatcgatgctcctcactattcgacagggttgatagggaaggat
aacgcgatagcaagacatggtatacatggaatatacagactatatactataaatgttcct
ggctctctccttggttttggtacaaatattatgtatctcacacaaagtagaggtgatagg
ccttttagaggacttatgtatgattatattcgtctcgaaggtccttcggatgaaaacaat
tag
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