Solanum pennellii: 107003578
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Entry
107003578 CDS
T04130
Name
(RefSeq) probable rhamnogalacturonate lyase B
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
spen
Solanum pennellii
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
107003578
Enzymes [BR:
spen01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
107003578
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Gene cluster
GFIT
Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
RhgB_N
EMC7_beta-sandw
CarboxypepD_reg
CarbopepD_reg_2
Motif
Other DBs
NCBI-GeneID:
107003578
NCBI-ProteinID:
XP_015057396
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Position
11:4398318..4404222
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AA seq
668 aa
AA seq
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MGRYKQLSVHVLEVTMVPLLFFLVADCHPHNGQRSTITSALKLDIQPKHVTMSNEIFNIT
LSKPHGDVTGISYGGVQNLLSTHNVETNRGYWDIIWNNTGPNTTRAKLSGTSFEVIINNE
NQTEISFKRTWNASQSNEPPLNIDKRFIILRNTSGFYTYSIVERLKGWPISYIQNLRLVF
KLQENMFHYMAVSDERQRVMPTSMDRKKGQVLDYKEAVHLTNSTNPDLNGEVDDKYFYAS
DNKDGKVYGWVSSTNPPLGFWMINPSNEYRTGGPFRQDLTTHIGPTVLSIFVSTHYAGED
LAIKFGQGEPWKKVIGPVFVYLNSNAAAKENPSMLWNDAKTRMNQEATSWPYEFPVSEDY
IKSNQRGTVSGKLFVNDSFISKHIVPASNAYIGLAPLGEAGSWQRENKGYQFWTKTHDNG
NFTIKKVISGTYNLYATIPGVLGDYKYTSIVDVTSGSNIKLGDLLYNPPRNGVTIWEIGV
PDRTAAEFFIPNPPPQFKVHKYKNNSESRFRQYGLWKQYSVLYPKTDLVYNVETSNYSRD
WFYAHVTRKIGNNKYKATTWKIIFNLANVSNASNYTLQLAIAAASQAELQVRINYENAEK
PHFTTGLIGGSNAIARHGIHGLYWIYSIGIQGKLLVNGANTIFLSQILALSPFQGVMYDY
LRFEGPHQ
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggggagatataagcaattaagtgtacatgtgttggaggtgactatggttcctttgttg
ttcttccttgttgctgattgtcatcctcacaatgggcaaagatcgacaataacatcagca
ctcaaattggacatacaacctaaacatgtcacgatgagcaatgaaatttttaatataact
ttatcaaaaccacatggtgatgtcactggcatatcatatggtggggtccaaaatctacta
tccacccacaatgtagaaaccaatagagggtattgggatattatttggaataacaccgga
cctaatactactcgagcaaagctttcaggaacaagttttgaggtaataattaataatgaa
aatcagacagaaatttcatttaaaagaacatggaatgcttctcaatcaaatgaacctccc
ctaaacattgataaaagatttataatactacgcaatacatctggattttatacgtattca
atcgttgaacgtttaaaaggatggccaatttcgtatatacaaaatctcaggctggtgttc
aagcttcaagaaaacatgtttcattatatggctgtttctgatgagaggcaacgtgtcatg
ccaacatcaatggatcgaaagaagggtcaagttcttgactataaagaagctgttcatctc
actaattcgactaatccagatttaaatggagaggtggatgacaagtatttctatgcaagt
gataataaagatggtaaagtttatggatgggttagttctactaatccaccattaggattt
tggatgattaatccaagtaatgaatatcgtactggaggaccttttagacaagaccttaca
acacatattggtccaactgtacttagtatatttgtgagtacacattatgctggagaggat
ttagcaattaaatttggacaaggagaaccatggaaaaaagttattggtcctgtttttgtg
tatttaaattcaaatgctgcagctaaggaaaatccttctatgctgtggaatgatgctaag
acaagaatgaatcaagaagctacaagttggccttatgaatttccagtttcagaagattac
atcaaatctaatcaaagaggaactgttagtggcaagctatttgttaatgacagttttatc
agtaaacatattgtgccagcatccaatgcttatataggattagcaccactaggagaagct
ggatcttggcaaagagaaaacaaaggttatcaattttggacaaaaactcacgataatgga
aatttcactataaaaaaggtcatatccggtacatataatttgtatgcaacaattccagga
gttcttggagattacaaatacacttcaattgtagatgttacttcaggttcaaatattaaa
ttaggtgatttattgtataatcctccaagaaatggagttacaatttgggaaattggtgta
ccagatagaactgctgctgaattttttattccaaatccacctccacaattcaaagttcac
aaatacaaaaataattctgaatcaagatttagacaatatggtttgtggaaacaatatagt
gttttgtatcctaaaactgatcttgtctacaatgttgagactagcaactactcaagagat
tggttttatgctcatgttacaaggaaaattggaaacaataaatataaagctactacatgg
aaaattatatttaatcttgccaatgttagtaatgcttcaaattacactctccaattggct
attgctgcagcttcacaagctgaacttcaagttcgtatcaactatgaaaatgcggaaaaa
cctcattttacaacaggacttatagggggaagtaatgcaattgcaagacatggaattcat
ggattatattggatttatagcattggaatacaaggcaaattgcttgtcaatggagcaaac
acaatttttctttcacaaatattggctcttagcccatttcaaggtgtaatgtatgattat
cttcgttttgaaggacctcatcagtaa
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