Solanum pennellii: 107003579
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Entry
107003579 CDS
T04130
Name
(RefSeq) uncharacterized protein LOC107003579
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
spen
Solanum pennellii
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
107003579
Enzymes [BR:
spen01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
107003579
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Motif
Pfam:
Rhamnogal_lyase
fn3_3
CBM-like
CarboxypepD_reg
RhgB_N
Motif
Other DBs
NCBI-GeneID:
107003579
NCBI-ProteinID:
XP_027768453
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Position
11:4427288..4432052
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AA seq
550 aa
AA seq
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MGFKMQNKRVLYCFAIIFQFFLLVNGSSVHHHDNRNTSAKENPKLQQVSPPVTLTVTNRY
VVIDNGIVQLSLTNPTGSIFGVKYNGIDNLLEPLPETQRGYWDTMWNGKFDTLLASKFSV
IAQDANKVEVSFQKLYNPLNGNNPPLNIDKRYVMLRGSSGFYSYGIFQHLKGWPAVNLDE
ARIAIKLSKSLFHFMAISDDRQRIMPTEEDRASGQTLDYREAVKITNPSNPRLKNEVDDK
YQYTDEIRNIKVHGWISDTPHMGFWVISPSYEYCNGGPMKQDLTSHVGPTSMAIFFSGHY
AGPQLGVSLTNGEAWTKVFGPVFFYVNSDSSNDHTILWEDAKRQMNEETKKWPYDFPASK
DYLHANQRGSVSGQLMVHDWYINVDVFPALNAYIGLAKPGLVGSWQSETKGYQFWTQTDD
SGNFKINNVRPGIYGVYSWVPGVMGDYKFSSYITVTQGKDTNLGQIIFEVPRNGPPLWEI
GFPDRTANEFFIPDPLPGLQNYLYTNTTIHKFRQYGLWNRYTDLYPNGDLVYKVGVSDFR
KDWFFAHVNR
NT seq
1653 nt
NT seq
+upstream
nt +downstream
nt
atgggtttcaaaatgcaaaacaaaagagttttgtattgctttgctattattttccaattt
ttcttgcttgtcaatggttcaagtgtgcaccatcatgacaatcgcaatacttcagccaaa
gagaatcccaaattgcaacaagtttctcctcccgtgacactaacggtcacaaatcgatac
gtggtaattgataatggcattgttcaactttctttaactaatcctactggttctattttt
ggagttaaatataatggtattgataatctccttgaacctttaccagaaacacaaagagga
tattgggatactatgtggaatggtaaatttgacacgcttttagcatcaaaatttagtgtg
atagcacaagatgctaacaaagttgaagtttctttccaaaaattatataatcctttgaat
ggtaacaatcctcctctaaatattgacaaaaggtatgtgatgctacgtgggagttctgga
ttttattcgtatggaatatttcaacatttaaaaggatggccagctgtaaatttggatgaa
gctagaattgctattaagctcagcaaatcactgtttcattttatggcaatatcagacgat
agacaaaggataatgccaacagaagaggatcgtgcaagtggtcaaacactagattataga
gaagctgttaaaattacaaatccatccaaccctagactcaaaaatgaggttgatgacaag
taccaatatacagatgagattagaaatattaaagttcatgggtggataagtgatactcca
cacatggggttttgggtaatttcaccaagttatgaatattgtaatggtggacctatgaag
caagatcttacctctcatgttggtccaacatctatggctatatttttcagtgggcattat
gctgggccacaattaggagtttcattaacaaatggagaagcatggactaaagtttttggg
cctgtatttttctatgttaattcagattcttctaatgatcataccatactttgggaagat
gctaaaagacagatgaatgaagaaacaaaaaaatggccttatgattttcctgcatcaaaa
gattatcttcatgcaaatcaacgtggctcagttagtggtcaattaatggttcatgactgg
tatataaatgtagatgtttttcctgcattaaatgcatatattggacttgctaaacctgga
cttgttggatcttggcaaagtgaaaccaagggttatcaattttggactcaaactgatgat
tctggtaatttcaaaataaataatgttagacctggaatttatggtgtatattcttgggtc
cctggagttatgggagattacaaattctcttcttatataaccgttacacaaggaaaggac
acaaacttaggtcaaattatatttgaagttccaagaaatggtccaccactatgggaaatt
ggttttccagatagaactgctaatgaattttttatacctgatccattgcctggtcttcaa
aattatttgtacactaacactactatacataagtttagacaatatggtttatggaatcgt
tacactgatttataccctaatggagatttagtgtacaaagttggtgttagtgattttaga
aaagattggttttttgcccatgtaaataggtaa
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