Solanum pennellii: 107004482
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Entry
107004482 CDS
T04130
Name
(RefSeq) protein RNA-directed DNA methylation 3
Organism
spen
Solanum pennellii
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KOW1_SPT5
Spt5-NGN
KOW4_SPT5
KOW
KOWx_SPT5
KOW5_SPT5
Spt5_N
KOW2_Spt5
NAP
Motif
Other DBs
NCBI-GeneID:
107004482
NCBI-ProteinID:
XP_015058173
LinkDB
All DBs
Position
11:complement(2457010..2468396)
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AA seq
1657 aa
AA seq
DB search
MGRKSVLQKGKEKVTDGKASSSAGKRKRNSSDDFDDDKTGGRKRKDRSVLQFVDDVAYEV
DDDYDDDSDFDFSDSDFFEQDLLEEEFGSNAEIKNEPARTPQPPVIKEEEMDGEELERML
RERYKPGSNFVTYAEDADDRKRQSEQETLVPSLKDPTIWKVKCTVGRERHSAFCLMQKYI
DLLALGTKLQIISAFALDHVKGYIYIESDKQCDVYEACKGLCSIYSTRVAPVPLNEVSHL
IAVRKKSSGISEGMWARVKSGIYKGDLAQVVAVNDSRKKVTVKLIPRVDLQAIADKFGGG
VAAKKGIIPAPRLISSTELEDFRPLIQYRKDRDTNLMFEILDGKMLKDGYLYKKVGTDSL
SYWGVLPTEAELLKFEPSSNDEPQDVDWLTQLYGDRKNKRNTNDFKVGQKGGEKGESSSS
SSMENNFEVDDLVFFGRNDFGIIIGKEKDDSFKIMKYGSERPVVVSVQLRELKRASFDKK
LFTVKDQLTNVISIGDVVRVLDGSLKDKQGTVKQIYRGVVFLYDQSEQDNNGYLCVKGQM
CERIASSGGVLNGKGSEPGPSGLADFSSSPKSPLSPEKSWRAKDDNNSFKRGDDNEMFSV
GQSLRIRVGPLKGYLCRVIAIRRSDVTVKLDSQQKILTVKSEHLAEVHAKSSVVSLGVDG
DSSKPFDLLGTKDGSDDWMVQGATATEGNTGNASWGASGGSDRTVADSGQDDGWAKATSA
AAATSGASGGWGKKVESHQESTEKVTDGSWGSSVQKQGNNDDSGKTSWGKQDGGSFWGKQ
SDANAETDWKKQDGGLDKTDSKTSWSQQGAGSSWNKSDGGSSSSKQAGGSSWGPQSDANA
ETGWTKQDGGSNKTDSKTSWSQQDAGSSWKKSEGEGGSSWGGKQSDAKADNDWKKQDGGS
SGSKPDSKTSFNQQGSGSSWNKSNGESSWGKQSDANAETAGEKQDGGSSWSKADDSKTSW
SKQDGGSSWNKKDDGSFSKPAGGTSWDKGSSGSTWNKKEAGSGGGEDTRSTWGKPDGGSS
WGKEAAGGWKEGESGNSGGTDQEGGSWGRPREFDGGRGSGGRRGRGGWRGGRDQSGRGRS
FNQGQSSSWTTDGEDNNNNSNNVSFKGNQSSWSNSQEHGKNVNEDTSGPNNQSSDFQSTG
GWGASKPSNDGWSSSWNKNSATTEVGSSGGNQSDWDKKSGEVGGAAGWDNKITQKASEGN
NSAWNSKSAVEQDGNGKNQNDPWKKTSDGGSSTGWGQSNSWKSGTNDAGGTQDSWSSKSN
WSSGSGFGSNNQQSDSYSDRGRGGSWRGGRGRSDRGGYGGRGGSDGGGFGGRGDSDGGGF
GGRGGFRGRGDRGGFRGRGSDGGGFRGRGRGRRDGSGEWQNRNDSQEDKPYSWSKGSGSD
AEGWKSNTGSWSQDNNNKGSWKSADSTGYAEDGGWKKGFDSEKNASGSGASTTSWNSPGN
SWKASTTTTGGNADDGGWKKGFDSEKNASGSGASTTSWNSPGNSWKASTTTTGGNAGDGG
WKKGFDSEKNASGSGVSTTSWNSPGNSWKASTTTTGGNADDGGWKKGFDSEKNVSGTGGS
WKTEGNNWKTSTATTGGTSSGWGQQTTVSEKEVQNDKGTSWNQGTGSGNASTAWTANKSN
TDDVNKPKETNDGPSDAWGKSTSSWGKGTSSGGQGDW
NT seq
4974 nt
NT seq
+upstream
nt +downstream
nt
atggggagaaaatcggttttacaaaagggtaaggaaaaagtcaccgacggcaaagcttcg
tcgtcggccggaaaacgtaagcgtaactctagcgatgatttcgatgacgataaaaccggt
ggtcggaagagaaaagatcgcagtgttcttcagttcgtcgatgacgttgcttacgaggtc
gatgacgactacgacgatgactctgattttgacttcagtgactctgacttcttcgagcaa
gatttgcttgaagaagaatttggaagtaatgctgaaatcaagaatgaacctgcgagaaca
ccccaacccccagtgatcaaagaggaggagatggatggagaagagctagagcggatgtta
agggagcgctataaaccaggttctaattttgttacctatgcagaagatgctgatgatagg
aagagacagtctgagcaggagacacttgtgccttctctcaaggatccaactatatggaaa
gttaaatgcacggttggaagagaaagacactcagctttctgtcttatgcaaaagtatata
gacttgcttgctttaggaacaaagctgcagataatatccgcttttgcacttgatcatgtg
aagggatatatatatatcgagtctgacaaacaatgtgacgtttatgaggcatgtaaaggc
ctttgtagtatatattcaactagagtggcacctgttccactgaacgaagtttctcatttg
attgctgtccggaagaagtctagtgggatttctgagggcatgtgggcacgtgtcaaaagt
ggaatatacaagggtgatctagcacaggttgtggcagtgaatgattcgcggaagaaagtg
acagtaaagctgattccaagagtagacttacaagccattgctgacaaatttggtggagga
gttgctgccaagaaaggaattattccagcaccaagactaattagctctacagagctcgaa
gactttcggcctctaatccagtaccggaaagatcgggatacaaacctaatgtttgaaatt
cttgatggaaagatgctgaaggatggttatttatacaaaaaagtggggactgattcattg
agctattggggtgtattgcctactgaagctgagctcctgaagtttgaaccttctagtaat
gatgaaccccaggatgtagactggcttacccagctttatggtgatcggaagaacaagaga
aatacaaatgattttaaggttggtcagaaaggaggtgagaaaggggagagttcttcaagc
tctagtatggaaaacaattttgaagtagatgatcttgtattttttggtaggaatgatttt
ggcattattattggcaaggagaaagatgatagctttaagatcatgaaatatggatcagag
agacctgtggtagtgagcgttcaactgcgtgaattgaagcgtgcatcttttgataagaag
ctattcactgtgaaagaccagctaactaatgtcatttcaattggtgatgtggttagagtt
ttggatggttccttgaaggataaacaaggaactgtgaagcagatttacagaggtgtcgtc
tttctatatgaccaaagtgaacaggataataatggttatctctgtgtcaaaggtcagatg
tgtgaaagaattgcaagcagtggtggtgtattgaacgggaagggaagtgaacccggtccc
tcaggtttagcagatttctcatcatcacctaaatcccctctttcgcctgagaaatcttgg
agagcgaaggatgataataatagcttcaagcgcggggatgacaatgaaatgttttcagtt
gggcagtctctgagaatccgagtggggcctttgaagggatacctttgtcgtgtaatagcc
atacgacgttctgatgttacagtaaagcttgattcccagcaaaaaattcttacagtcaaa
tctgaacatcttgcggaagttcatgcaaagagttctgtcgtatctcttggggtcgatggt
gattcatcaaaaccttttgacctgcttggaacaaaggatggttctgacgattggatggtt
caaggggctactgccaccgagggtaacaccgggaatgcatcatggggtgcatctggaggt
agtgatagaactgttgctgactctgggcaagatgatggttgggcgaaagctacttctgct
gctgctgccactagtggtgcgtctggtggctggggcaaaaaggttgaatcacatcaagag
agcactgagaaggttacagatggatcctggggcagttctgtgcaaaaacaagggaataat
gatgattctggaaaaacctcatggggcaagcaggacggtggatctttttggggtaagcaa
tctgatgcaaatgcagagactgactggaaaaaacaagatggtggattggacaagacagat
agcaaaacctcgtggagtcagcagggtgccggatcttcttggaataaaagtgatggtgga
tcgtcttcaagtaagcaagcgggtggatcttcttggggtccgcaatcggatgcaaatgct
gaaactggatggacaaagcaggatggtggatcaaataagacagatagcaaaacctcgtgg
agccagcaggatgctggatcttcttggaagaagagtgaaggtgaaggtggatcctcttgg
gggggtaagcagtctgatgcaaaggcagataatgactggaaaaagcaagatggtggatct
agcgggagtaagccagacagcaaaacctcttttaaccagcagggttctggatcttcttgg
aataaaagcaacggtgaatcttcttggggtaagcaatctgatgcaaatgcagagactgcc
ggggaaaagcaagatggcggatctagttggagcaaggctgatgacagcaaaacctcttgg
agcaagcaggatggtggttcttcttggaacaaaaaggatgatggatctttctccaagcca
gctggaggtacttcttgggacaaaggaagtagtggatctacttggaataagaaggaagct
ggatctggtgggggagaagataccagatctacttggggcaaaccggatggtggatcttct
tggggtaaagaagctgcagggggttggaaagaaggtgagagtgggaatagtggtggtacg
gaccaagaaggagggagctggggaaggccaagagaatttgatggaggtcgtggatcaggt
ggtaggagaggacgaggtggttggcgaggaggtcgagatcaaagtggtagaggaagatcc
ttcaatcaaggacagtctagtagctggactactgatggtgaagataataataataattct
aataatgtatcatttaagggtaaccagtctagttggagtaattcacaggaacatggtaaa
aatgttaatgaagacaccagtggtcctaataatcaatcgtctgatttccagagcactggt
ggttggggtgcttccaaaccatcaaatgatggatggtcttctagttggaataaaaattca
gccacgactgaggtaggaagttctggtggaaaccagtctgattgggacaaaaaatctggt
gaagtgggtggagccgctggttgggacaacaagattacccagaaagcttcagaaggtaac
aactctgcatggaatagcaaatctgcagtcgaacaagatggaaatggaaaaaatcaaaat
gatccatggaaaaagacttctgatggaggttcatctactggatggggtcaaagtaattcg
tggaagagtggaactaatgatgcgggtggaactcaagattcttggagcagcaaaagtaac
tggagttctggaagtggctttggtagcaacaaccagcaatctgattcttacagtgacagg
ggaagaggtggtagttggaggggaggccgtggtagatcagataggggtggatatggaggt
aggggtggttcagatggtggtggctttggaggtaggggtgactcagatggtggcggcttt
ggaggtcggggaggttttcgaggtagaggggacagaggaggttttagaggtagaggatca
gatgggggaggatttcgtggtagagggcgtggaaggagggatggaagtggtgaatggcag
aatagaaatgattcgcaggaagataaaccctacagttggagcaaaggctctggcagtgat
gctgagggatggaaatctaatacgggcagttggagccaagataacaataacaaaggcagc
tggaaaagtgctgatagtacaggttatgctgaggatggtggatggaagaaaggattcgac
tctgaaaagaatgcgagtggaagtggtgctagtactaccagttggaatagtccaggaaat
agttggaaagcatcaactactactacaggaggtaatgctgatgatggtggatggaaaaaa
ggatttgactctgaaaagaatgcgagtggaagtggtgctagtactaccagttggaatagt
ccaggaaatagttggaaagcatcaactactactacaggaggtaatgctggtgatggtggg
tggaaaaaaggattcgactctgaaaagaatgcgagtggaagtggtgttagtactaccagt
tggaatagtccaggaaatagttggaaagcatcaactactactacaggaggtaatgctgat
gatggtggatggaagaaaggattcgactccgaaaagaatgtgagtggaactggtggcagt
tggaagactgaaggaaataattggaaaacatctactgctactacgggaggtacatcgtca
gggtggggtcagcagacaactgttagtgaaaaggaggttcagaatgacaagggaacaagt
tggaaccagggaactgggtcaggaaacgcgagcacagcttggactgcaaacaaatccaac
actgacgatgtgaacaaaccaaaagaaacaaacgatggaccgagtgatgcatggggtaaa
tcaaccagctcttggggcaaaggaaccagctctggtggccagggagactggtga
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