Solanum pennellii: 107004613
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Entry
107004613 CDS
T04130
Name
(RefSeq) protein PIR isoform X1
KO
K05749
cytoplasmic FMR1 interacting protein
Organism
spen
Solanum pennellii
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spen03019
]
107004613
Messenger RNA biogenesis [BR:
spen03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
107004613
Factors involved in mRNA localization
Other mRNA localization factors
107004613
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FragX_IP
CYRIA-B_Rac1-bd
Motif
Other DBs
NCBI-GeneID:
107004613
NCBI-ProteinID:
XP_015058372
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All DBs
Position
11:complement(7398518..7442043)
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AA seq
1287 aa
AA seq
DB search
MAVPIEEAIAALSTFSLEDDQPEVQGPGFWVSAEGGATISPIEYSDVAAYRLSLSEDTKA
INQLNTLIQEGKEMGSVLYTYRSCVKALPQLPDSMKQSQADLYLETYQVLDLEMSRLREI
QRWQASAASKLAADMQRFSRPERRINGPTVTHLWSMLKLLDVLIQLDHLKNAKASIPNDF
SWYKRTFTQVSVQWQDTDSMREELDDLQIFLSTRWAILLNLHVEMFRVNNVEDILQVLIV
FIVESLELNFALIFPERHTLLRVLPVLVVLAASSEKDSESLYKRVKINRLINIFKNDPVV
PAFPDLHLSPAAILKELSTYFPKFSAQTRLLTLPAPHELPLREAQDYQRQYLIVNHIGAI
RAEHDDFTVRFASAMSQLVLLKSIDGVDVEWVKEVKGNTYDMVVEGFQLLSRWTARVWEQ
CAWKFSRPCKDPVPMESHDMPASFSDYEKVVRYNYNAEERKALVELVSYIKSIGSMMQKV
DTSVTDALWETIHAEVQDFVQNTLATMLRTTFRKKKDLSRILSDMRTLSADWMANTSKPE
TEMQSYPHSGEESRGTLFYPRPVAPTSAQVHCLQFLIYEVVSGGNMRKPGGIFGNSGSEI
PINDLKQLETFFYKLGFFLHVLDYTATLGTLTDLGFLWFREFYLESSRVIQFPIECSLPW
MLVDHVIESPIIGLLESALMSFDIYNDAAQQALVILKQRFLYDEIEAEVDNCFDIFVLKL
CETIFTYYKSWAASELLDPSFLFAIDIGEKFAVQPMRFVALLKTTRVKLLGRTINLRSLI
ADRMNKMFRDNLEFLFDRFESQDLCAIVELEMLLDILQLTHELLSKDLTIDSFNLMLNEM
QENVSLVSYSSRLASQIWTEMQNDFLPNFILCNTTQRFVRSARVPPVPVQKPSVPYAKPN
FYCGTPDLNSAYQSFARLYCGFFGVPHMFSLVKLLGSRSLPWLIRALLDNISNKITTVEP
MITGLQEALLKSIGLLPFDGGISGCMRLAKEHLSCWHSKSELKAEVLCGIKEIGSILYWM
GLLDIVLREVDTRQFMQTAPWLGLIPGADGQILHSQEGGDSPMVTLFKSATTATMSNPNC
TNPTSFHTISRQAEAADLLYKANINTGSVLEYALAFTSAALDKYCSKWSAAPKTGFIDIT
TSKDFYRIFSGLQIEYLEESVQLQSNTYEMLGDSVAWGGCTIIYLLGQQLHFELFDFSHQ
VLNVAEVESVAISPTQKNPNFLQGIEVLLEAMKKARRLNNHVFSMLKARCPLEDKQACAI
KQSGAPLHRIKFENTVSAFETLPQKGA
NT seq
3864 nt
NT seq
+upstream
nt +downstream
nt
atggcggttccgattgaagaagccatagctgcactatccacattttctctagaggatgat
caaccagaagtacaaggcccagggttttgggtttcagctgaaggaggtgcaactattagt
ccaatcgagtacagtgatgtggctgcatataggttgtccttatcagaagatactaaagct
attaaccagctgaacacacttatacaagaggggaaggaaatgggttccgtgctctacaca
tatagaagttgtgttaaagcacttcctcagcttccagattctatgaagcaaagtcaggcc
gacctgtatcttgaaacttaccaagttttggatttggaaatgagccgtctacgtgaaatt
cagagatggcaagcatccgcagcatctaagctggcagctgacatgcaacgtttttccaga
cctgagcgtcgtattaatggtcccacagtaactcatctttggtccatgctgaaattactt
gatgttctgatccagcttgatcatcttaaaaatgcaaaagctagtatacctaatgacttc
tcttggtacaaaaggacattcacacaagttagtgtgcagtggcaagatacagattcaatg
agggaggagttggatgatttacagatcttcttgagcacgaggtgggctattttgttgaac
ttgcatgttgagatgttccgtgtcaacaatgttgaagacattcttcaagttctaattgtt
ttcatagtcgagtctttggagttgaattttgcacttatatttccggagaggcacacactt
cttcgtgttttgcctgtccttgttgtcctagcggcatcatcagagaaagatagtgaatca
ttgtacaaaagggtgaaaatcaacagacttattaacatatttaagaatgatcctgtggta
cctgctttcccagatcttcacctgtctcctgctgcgattttaaaagagttatcgacatac
ttccctaaattttctgcacaaactcgtcttctcactcttccagcacctcatgagctgcca
ctgcgtgaggcacaagattatcagaggcaatatctgattgtcaaccatattggggcaatc
cgtgctgagcatgatgacttcactgttcgttttgcttcagccatgagtcagcttgtcttg
ctaaaatcaattgatggtgtggatgtagagtgggttaaggaagtcaaaggaaatacttat
gacatggttgttgaaggttttcaactcttaagcagatggactgcacgagtttgggaacag
tgtgcttggaagttttctcgcccatgcaaggatcctgttccaatggagtcacatgacatg
cctgcatcattttccgactatgaaaaggtggtacggtacaattataatgctgaagaaagg
aaggctctggttgaacttgtaagctatatcaagagtattgggtcaatgatgcaaaaggtg
gacacttcagtgaccgatgccttgtgggagacaatccatgcagaggtgcaagatttcgtt
caaaatacgctggcgacaatgttgcggactaccttccggaaaaagaaagacctttctagg
attctttctgatatgagaacactttcagcagattggatggcaaatactagtaagccagag
actgaaatgcagtcatatccgcatagtggtgaagaaagcagagggaccctattttatcca
aggccagtagcaccaacatctgctcaggtccattgcttgcagttcctcatatatgaagtg
gtttccggtggcaacatgcggaagcctggtggtattttcggaaatagtggttctgaaata
cctatcaatgacttgaaacagctggagacattcttctacaagcttggttttttcttacat
gtattagactacacagctaccctaggaactttgaccgatcttggtttcttatggtttaga
gaattctatctggagtcttctcgtgttatacagttccccattgaatgctcccttccatgg
atgctggtggatcatgtgatcgaatctccaattattggccttctggagagtgccttgatg
tcatttgacatctataatgatgctgctcagcaagcattagtgatcctcaagcaacgtttt
ttatacgatgaaatcgaagctgaggtagacaattgttttgatatatttgtcttgaagttg
tgtgagaccatttttacttactacaaaagttgggcagccagtgagctacttgatccatca
tttctctttgccatagacattggggaaaagtttgcagtccagccaatgagattcgtagct
cttttaaaaacgactagagtgaagcttctaggtcggaccatcaacttgagaagtttgatt
gctgataggatgaacaaaatgttcagggataatcttgaatttctgtttgatcgctttgaa
tcacaggatttatgtgctattgtggagctggaaatgttgctggacatcttgcaacttact
catgaattactctcgaaagaccttacaatagattctttcaatcttatgttgaacgagatg
caggagaatgtatcccttgtttcttattctagtcgtcttgcttcgcagatttggacagaa
atgcaaaatgacttcttgccaaatttcatcctctgcaatactactcagcgttttgtccga
tcagcacgagtgccccctgttcctgtccagaagccttcggttccttatgcaaagccaaat
ttctactgtggaactcctgatctgaattctgcttaccagagctttgctcgattgtattgt
gggttttttggtgtgcctcacatgttttctctagtcaagctcttgggatctaggtcactt
ccttggcttatccgagcccttttggataatatatcgaacaagattactaccgttgaacca
atgattactggactgcaagaagctttgctgaagtctatagggttacttccatttgatggt
ggtatatcaggatgcatgaggcttgccaaggagcatcttagctgctggcattcaaagtct
gaactcaaagctgaagtcctttgtggaatcaaggagattggtagcatattgtactggatg
ggacttcttgatattgtattgagagaagtcgatacccgccagtttatgcaaactgctcct
tggttgggattgattcctggtgctgatgggcaaatattgcactctcaagaagggggagat
agccctatggtcactctgtttaaatctgcaactactgcaaccatgtccaaccctaactgc
acaaatccaacatcatttcacacgatatcaagacaagcagaagctgccgatttgttgtac
aaagccaatattaatactggaagtgtgttggaatatgcccttgcttttacaagtgctgca
ttagataaatactgcagtaaatggagtgcagccccaaagacgggttttattgatattact
acttcaaaggacttctaccggattttcagtggacttcaaatcgaatacctggaggaatct
gttcagctacaatccaacacttacgaaatgttgggcgattcagttgcctggggtggatgc
acaataatctacctgcttgggcaacaattgcattttgaattgtttgatttttcccatcaa
gtcctcaatgttgctgaggtggagtctgtagcaatatcgccaacacagaagaatcctaat
ttcctccagggtattgaagttttgctggaagctatgaagaaagcaaggaggctaaacaat
catgtgttttcaatgttaaaagcacgctgtccattggaagataaacaggcttgtgccatc
aaacaaagcggtgcacctttgcatcggataaaatttgagaatactgtgtccgcttttgaa
acgttgccacagaaaggtgcctga
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