Solanum pennellii: 107004625
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Entry
107004625 CDS
T04130
Name
(RefSeq) uncharacterized protein LOC107004625 isoform X1
KO
K14311
nuclear pore complex protein Nup188
Organism
spen
Solanum pennellii
Pathway
spen03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
107004625
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spen03019
]
107004625
Messenger RNA biogenesis [BR:
spen03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
107004625
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
107004625
NCBI-ProteinID:
XP_015058389
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Position
11:complement(33167128..33233735)
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AA seq
1979 aa
AA seq
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MATTTEANDEASRSTTTKIVDASLWWDPFPQLLAELESVSPSSDLPPPLGKKIKENHAWF
LDTVSLFKPPNLKSREALNASRLKIGLHQITVETDKKEAAMKISSALCLDEVQSYILVDR
TIDQKCIVADGVFRELPHLAMLQYYLERQCLMKCTRHIVMQALYIATRSQDAFIVDEAQK
LISDGLDRKFFSVLQENLHSNFPENMDVDLYTLWAEEIVTEDNLVLDVLFLIFYEFCPCT
GELWKKLCLLYEGFISNSYNFGRLAVSAEAVSSINHAKLQLLLILIETLDLENLLQMVHD
ETPFRHGYVTFSLSEVEEIDAMVSTFDVFENKESGPLVLAWAVFLCLISSLPGKEENSIL
MEIDHIGYVRQAFEAGSLSSFLEIIENDILRDFDGPITGFRSVLRTFLSAFIASYEINLQ
LEDGNLKLILDILCKIYQGEESLCTQFWDRESFVDGPIRCLLCSLEGEFPFRTAELLQLL
TALCEGAWPAECVFNFLDKSTGLSSPVDISSCAIVNDASQTVMVVQPLHLPGIEGLVIPS
GTSGHLLKMIDRDIALVRWEFPQSGIVVLLLRLAQGLYMEKTSEIVMTLGFLSRLVTFNM
GVCYSLLDLGGYMHDEMNSPTEHLRINVAEIVCAFIKNLSPDCSGVALMSMGVKILAKML
KCSPYHVSRLIVQANIFDVAFKTNPFKVDSNGLSSGSWLLSGRLAKMLLIDCEQNDCQLI
LSVLDFTMQLMDSGMENDVVLALVIFSIQYVLVNHEFWNYKNKHTRWKVTLKVLEVLKKC
IFSISYIQKLGEVVKDILFGDSSIHNALFRLVCTTSDVLEKLYFSRLYGLTDIEGLQQAI
VLGLDILSSMLSDFSRVVPTFTVFCQAVMSLTAKPVPVVTAVISLMSFFRNPKIQVGAAR
LLSRLFIIRDDSQSYALSSVCFGLDDKQIYNFKNTICSILCQEKVESGDLIIATFKMLTS
AARYQASFLTAVIALEENPISESCKGDNHPANNNALQCNAANILDCIWIYVKRSDDLVMT
KSRIMCNVLNFLKALWQGAAHYTSLLKQLRNSDFWEKLLSSAVLSISKKSCQSESTTELE
LQNLAYKYQCQHNVLDVVACEMILQKKILHSELVTKESSKCLHNGSDGCKVATAESSCNL
KEILGAWCGSSLDAETIKTFVSFEYDDSVKLRARVAAGLFAVRIMCKVKGGDRGSLSVSL
VDKITNLWQKLRKLPAFSELMAIYTKHGYREGNELDDLILNDLFYHLQGELEGRQISHMS
FKELSQYLLQSNFLQTYQRKHHEDIFPQTDGVCLYDTDRLQGDMAIDLWDLSDWKASKAV
AEMLLLSLQNVNVMVSLTTSKLSALIALATTFSISDNDNVSFESLDNEVRSGRKIPEKSL
SSSIDNICQSLHRTIELLPPVSDASEDIVNILAAQAELLFHFTRSPSTHLSLSTCLLILK
TSGCGLKVLCNCRPLVTGVLFPMKIFLMLVLFSLKSSRRGSHLGVQTKIEHNEALAEAAN
VSLGLLPLICSCIELTEHCSLSVIITDQIIKGFSTVATWFPIIQKHLPMQRIVLKLQDKS
SYSNIGIILKFLLTIAHVKEGAEMLVKTGFFASLSVLLADLSNGRPLSVVERERNLADTF
ENNERAQPIWGLSLAVVTAIINSLGESSIFNVEHVVTYFLLEKADLISYYLSAPDFPPDD
HDKKRLRALKPHTSLSALREIENTVMLICVLAKHRNTWSRAIKEMESQLRERCIHLLAFI
SCGTPRHGESQGRVPPIFCHPTLREEYEWHKKPSSINSKNGWFAFSAYCCSLNPKYSSFS
PRTGTVIKDQPNEHVNLTSQTHFSDAMSVQIYRITSLLLKFLCQQAEDAAARAEEVGFVD
LSHFPELPMPDILHCLQDQGISIVTELCEVNKLKQVSSEIQGVCVLLLQITVMALYLEFC
VIQICGMRPVHGHVEYFSKEFYALTKAMEGNAFLKESMNSLKQMVSFVYPELLQAEDVI
NT seq
5940 nt
NT seq
+upstream
nt +downstream
nt
atggccacaactacagaagctaatgatgaagcttcaagaagcaccaccaccaagattgtt
gatgcttcgctttggtgggaccccttccctcagttgctcgctgaactcgaatctgtttct
ccctcctctgacctccctcctcctctggggaagaagataaaggaaaaccatgcatggttt
ctggacacagtttcactatttaagccacctaacctgaaatcaagggaggctttaaatgcc
agccgactgaagattggtctacaccagattactgtagaaactgataaaaaagaagcagcc
atgaaaattagttctgctttgtgtttggatgaggtgcagtcatatattcttgttgataga
accattgatcaaaaatgtatcgttgctgatggtgtatttcgcgagcttcctcatttggct
atgcttcagtattatttggaacgacaatgtttaatgaagtgcacacgtcatatagttatg
caagctttatatatcgcgacaagatctcaagatgcgtttattgtagatgaggcacagaaa
ttgatttctgatggactggacaggaaattcttttctgtcctgcaggagaatctacactct
aactttcctgagaacatggatgttgacctttatactttgtgggctgaagaaatagtaact
gaagacaatcttgtactggatgttcttttcctcatattttacgagttctgcccctgcacg
ggtgaactgtggaaaaaattgtgcttactttatgagggattcatttcaaattcttataat
tttgggaggttggctgtatctgctgaagcagtttcctctattaatcatgccaaactgcag
ctgctgcttatcctcatagaaactttggatttggaaaatcttttgcagatggttcatgat
gaaactccgttcaggcatggttatgttactttttctttgtcggaggtggaagaaattgat
gctatggtgtccacttttgatgttttcgaaaacaaagaatcgggaccattggttttggca
tgggcagtgtttctctgtctaatttcatctcttccaggaaaagaagaaaacagtatactg
atggagatcgatcatattggttatgtccgccaagcttttgaagctggatcattgagttct
tttcttgaaattattgaaaatgatatactgagggattttgatggccctattactggtttt
agaagtgttttgcggacatttttatcagcatttattgcatcttatgagatcaatctccag
ctggaggatggtaacctgaaattgattttggatattctttgcaaaatttatcaaggagag
gagtccctttgtactcagttttgggatagggaaagttttgtcgatggtcctatcaggtgc
cttctttgcagcttggagggtgaattcccatttagaactgctgaacttttacagttgtta
actgcactttgtgaaggagcgtggcctgcggaatgtgtatttaattttctagacaagtcc
actggattgtcgtctcctgttgacatcagtagctgtgcaattgtgaatgatgcttctcag
actgttatggtggtccaaccattacatcttcctggtattgaggggctggtcattcctagt
ggaaccagtggccatctgttaaagatgattgatagggatattgctctagtcagatgggag
ttcccgcaatctgggatagtagtgctgcttttgcgtttggcccaagggctgtacatggag
aaaaccagtgaaattgttatgactcttggatttctcagccggcttgtgactttcaacatg
ggtgtttgctattctcttctggaccttggtggctatatgcacgatgaaatgaattcacca
acagaacacctgcgtattaatgtggctgaaatcgtttgtgcttttatcaagaatctgtct
cctgattgctctggtgtggcgttgatgtcaatgggagttaagattttagcaaagatgtta
aaatgctcaccatatcatgtttcaaggttgatagtccaggcaaatatctttgatgttgct
tttaagacgaatcccttcaaagttgactccaatggcttatcgagtggatcgtggttgctt
tctggccggctcgcgaaaatgcttttgatcgactgtgagcagaatgattgtcaattgata
ctttcagtgcttgacttcacgatgcagcttatggattctggaatggaaaatgatgttgtc
cttgcactagtcattttctccattcagtatgtccttgttaatcatgaattctggaattat
aaaaacaagcacactcggtggaaggtgacactgaaggtgcttgaagtcttgaagaaatgc
attttttccatttcatatatccagaaacttggcgaagtggtcaaggatattttatttggt
gattcttcaatccacaatgcactctttcgacttgtttgcacaacttcagatgtcctggag
aagctctattttagccggctttatggactgacagatattgaaggattacagcaggctatt
gtcttgggattggatattctttccagtatgctttctgatttttcaagggttgtgcctact
ttcactgtcttttgtcaagcagtcatgtcactgacggcaaaaccagtgcctgtggttact
gctgtgatatcactgatgtcattcttccgaaatcctaagatacaggtgggtgcagcaaga
ctgctttccaggttgtttattattagagacgactcacaatcatatgcacttagcagtgta
tgtttcggtctggatgacaagcagatctataattttaaaaataccatttgtagcattctt
tgtcaagagaaagtagaaagtggggatctcataattgctactttcaagatgcttacttct
gctgcacgctatcaggcttcttttcttaccgctgtgatcgctttggaagaaaatccaatt
tctgaatcatgcaagggtgacaatcatccagccaacaataatgcattacagtgcaatgct
gcaaacatattagattgcatatggatttatgttaaaagatctgatgatcttgtgatgacc
aaatcgcgtataatgtgtaatgtgctaaacttcctaaaagcattatggcaaggagctgct
cattatacaagtcttctgaagcagctgagaaattcagacttctgggaaaagctactgagt
tctgccgtgctctccataagtaagaagagttgccaatctgaaagcacgaccgaattggag
ctccaaaatctggcatacaaatatcagtgtcaacataatgtattggatgtggtggcctgt
gaaatgatcctgcagaaaaagattttacattctgagttggtcacaaaagaatcttctaaa
tgtttacataatgggtcagatggctgtaaagtagcaacagctgaaagttcatgtaacctg
aaggaaattttaggagcgtggtgtgggagctcattggatgcggagactatcaagacattt
gtttcatttgagtatgatgattctgtaaagctgcgtgcaagggttgctgctggtctgttt
gctgtgcgcatcatgtgtaaagtaaaaggtggtgatagaggaagtttgtctgtttcactt
gttgataaaattactaacctgtggcaaaagttgaggaagttgccagccttttctgagttg
atggctatttatacgaagcatggttaccgtgaaggaaatgaactggacgacttaattctc
aatgatttattctatcatctgcaaggagagcttgaaggtagacagatttcccacatgtca
ttcaaggagctgtcacaatatctgctacagtcaaatttcttgcaaacatatcagcgtaag
caccatgaggacattttccctcaaactgatggtgtctgcttatatgacactgaccgtctg
caaggggacatggctattgatttgtgggatctttcggattggaaagcatctaaagcggtt
gcagaaatgctgttgctctctttgcagaatgttaatgtcatggtgtcactcacaacatcc
aagctttcagctttaatagctttggcaactactttctccatatctgacaatgataatgtg
agttttgagtcacttgataatgaagttaggagtggcagaaaaattcctgaaaaatcattg
tcatctagcattgataatatatgccagtctctccaccgcacaatcgagctattacctcct
gtttctgatgctagtgaagacatagttaatattcttgcagctcaagcagagttgcttttc
cactttaccaggtctccgagtacacatttatctttatcgacatgccttctgatattaaaa
acatcaggttgtggcctcaaggtgttgtgtaactgtaggccattggttactggtgtcttg
tttccaatgaagatatttttgatgctagttctcttttcactcaaatcaagtcggagaggt
tctcaccttggagtacaaacaaaaattgagcataatgaagccttagctgaggcagctaat
gtgagcttggggctactaccgctgatttgcagctgtattgaacttactgaacattgttcc
ctctctgtgattattaccgatcaaataatcaaaggtttttcaacagttgctacttggttc
cccataattcaaaaacatctcccaatgcagcgtattgttcttaaacttcaagataaaagc
tcctattcaaacattggcattatattgaagtttcttttgactattgcacatgtgaaggaa
ggtgctgagatgcttgtaaaaactggtttctttgcatctttaagtgtgttgttggctgac
ctatctaacggtagacctctctcagtagttgagagggagagaaatctggcagacaccttt
gagaataatgaaagggctcaacccatttggggacttagcttggctgtggttacagcaatt
attaactctttaggagaaagttcgattttcaatgtggaacacgtggtgacttacttcctc
ttggagaaggctgatctaatttcatattatctaagtgctccggattttccaccagatgat
catgataagaaaagacttcgggcactcaaaccacatacttcattgagtgctcttagagag
attgaaaatacagttatgttaatctgtgttctggcaaagcataggaatacctggtcaagg
gccataaaagaaatggagtcacagttaagggaaagatgcatacatttattggcctttatt
agctgcggtacaccacgtcatggggaatcacaaggaagagttccccccatcttttgtcat
cctacccttagggaggagtacgagtggcacaaaaagccatcatctatcaatagcaaaaat
ggctggtttgctttttctgcatattgctgcagtctaaatcccaaatattcatctttttcg
cctagaactggtactgtgatcaaagatcaaccaaatgagcatgttaacctgacttcgcag
acacacttttcagatgcaatgtctgttcagatatacagaattacctctcttctccttaag
tttttgtgtcaacaagctgaagatgctgctgcaagggctgaagaagtgggttttgtcgat
ctttctcattttcctgagctaccaatgcctgatatccttcactgcttgcaggatcaagga
atatctattgtcactgagttgtgcgaagtcaacaagttgaagcaggtttcttctgaaata
caaggggtctgtgttttgctgttgcaaattactgttatggcattgtacctggaattttgt
gttatccaaatctgtggaatgagacctgtgcatggacatgttgagtacttctccaaggaa
ttttatgctctgacaaaagctatggaaggaaatgcatttttgaaagaatctatgaactcc
ttgaagcaaatggtgtcttttgtgtatcctgaattattgcaggcagaagatgtaatatga
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integrated database retrieval system
