Solanum pennellii: 107004792
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Entry
107004792 CDS
T04130
Name
(RefSeq) vacuolar protein sorting-associated protein 41 homolog
KO
K20184
vacuolar protein sorting-associated protein 41
Organism
spen
Solanum pennellii
Pathway
spen04142
Lysosome biogenesis
spen04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome biogenesis
107004792
04148 Efferocytosis
107004792
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
spen04131
]
107004792
Membrane trafficking [BR:
spen04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
107004792
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_Vps41
Beta-prop_Vps41
zf-RING_Vps41
Clathrin
Beta-prop_WDR3_1st
VPS18_solenoid_2nd
WD40_WDHD1_1st
WD40_CDC20-Fz
WD40
Beta-prop_THOC3
Beta-prop_WDR5
Beta-prop_IFT122_1st
Beta-prop_HPS5
WD40_Prp19
WDR55
zf_RING_Vps8
Beta-prop_WDR3_2nd
Beta-prop_EML_2
Beta-prop_WDR36-Utp21_2nd
Beta-prop_VPS8
zf_RING_Vps8_fungal
zf-RING_2
VPS18_RING_C
WDR90_beta-prop_4th
EIF3I
TPR_YpiA
Beta-prop_IP5PC_F
PEP5_VPS11_N
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
zf-HC5HC2H
Beta-prop_WDR11_2nd
Motif
Other DBs
NCBI-GeneID:
107004792
NCBI-ProteinID:
XP_015058629
UniProt:
A0ABM1FLI2
LinkDB
All DBs
Position
11:62052036..62065278
Genome browser
AA seq
957 aa
AA seq
DB search
MSRKLSDNGIDGDDERDEEEEYSDEEEEDGEEDEYEPRLKYQRMGGSVQSLLSSDAATCI
AVAERMIALGTYSGAVHILDFLGNQVKEFAAHTAAVNDLCFDTEGEYIGSCSDDGSVIIN
SLFTNERMKFEYHRPMKAVALDPDYARKSSRRFVTGGLAGNLYLNAKKWMGYRDQVLHSG
EGPVHAVKWRTSLIAWANDAGVKVYDAANDQRITFIERPRGSPHPELLVPHIVWQDDTVL
VVGWGTSVKIASIKTNQNKGLNGSYKYITMSSLNQVDIVASFQTSYFISGIAPFGDSLVV
LAYIPAEEDGEKNFSSTIPSRQGNAQRPEVRVVTWNNDELATDALPVHGFEHYKAKDYSL
AHAPFSGSSYAGGQWAAGDEPLYYIVSPKDVIIAKPRDTEDHINWLLQHGWHEKALEAVE
ANQGRSELVDEVGSRYLDHLIVERKYGEAASLCPKLLRGSPSAWERWVFHFAHLRQLPVL
VPYIPTENPTLRDTAYEVALVALATNPSFHKDLVSTVKSWPPGIYSTSPVISAIESQLNT
SSMTDHLKEALAELYVIEGQHDKAFALYADLMKPDLFDFIEKHNLHDAVREKVVQLMMVD
SKRAIPLLIQHRDFIYPPEVVSQLMAAKTKCDCRYLLHLYLHSLFEVNPHAGRDYHDMQV
ELYADYDPKMMLPFLRSSQHYTLEKAYDICVKRDLLKEQVFILGRMGNAKQALAIIINRV
GDIEEAIEFVSMQHDDELWDELIKQSLNKPEMVGVLLEHTVGNLDPLYIVNMLPNGLEIP
RLRDRLVKIVTDYRTETSLRHGCNDILKADCVNLLVKYYKEAKRAICLSEDVDQAHSKRN
QQRASHLGERVMSMKSMEVKSKTRGGGRCCICFDPFSLLNVSIIAFFCCHAYHTTCLMES
TISIGGDKKEAGASSKGTASYYEFDNGSDDDDEEEDDEDASSGTPRMRCILCTTAAG
NT seq
2874 nt
NT seq
+upstream
nt +downstream
nt
atgtcacgaaagttatcggataacggaatcgacggcgacgacgagagggacgaagaagaa
gaatattccgatgaagaagaagaggacggagaagaagatgaatatgaaccaaggctcaag
tatcagaggatgggaggcagtgtgcaatcgcttctttcaagcgatgctgctacgtgtatt
gccgtcgcggagagaatgattgcccttggtacatacagtggagccgttcacattttagat
tttctcggcaatcaggttaaagagtttgctgctcatactgctgcagtcaacgatctttgc
tttgacacagaaggtgaatacattggaagctgttctgatgatgggtctgtcataataaat
agtctttttactaatgagaggatgaaatttgagtatcatcgtcctatgaaggctgttgct
ttagacccagattatgcaagaaagtcttccagaagatttgtgaccggtggtttagctggt
aatttgtatcttaatgcgaagaagtggatgggctatcgggaccaggttctgcactctggt
gaaggtccagttcatgcagtgaagtggcggactagtctcattgcctgggcaaatgatgca
ggagttaaagtttatgatgctgccaatgatcagcgcataactttcattgaacgacctcgt
ggaagcccacaccctgaacttcttgtccctcatatagtttggcaggatgacactgttttg
gtcgttggatggggaacctcggtgaaaattgcatcgataaaaacaaaccagaacaaaggc
ttgaatgggtcatacaagtatataaccatgtctagtctgaatcaggtggatattgtggca
tcctttcaaaccagctatttcatttcaggaattgctccttttggtgattctttggttgtt
ctagcttatattcctgctgaagaagatggagagaagaactttagcagcactattccctcc
agacagggaaatgctcaaagaccagaagttcgtgttgtgacatggaataatgatgagctc
gctaccgatgctctccctgtacatggctttgagcattacaaggcgaaagattattcgctt
gctcatgctccattttcaggtagcagctatgcagggggtcagtgggctgctggtgatgaa
cccttatactacatagtgtccccaaaagatgtgattattgcgaagccaagggacacagaa
gatcatattaattggcttctccagcatggatggcatgagaaagctttagaagcagttgag
gccaatcagggaaggagtgagctcgttgatgaggtgggttcgagatacctcgatcatctg
attgtggaaaggaagtatggtgaagcggcatctctatgtccaaaattgttgcgaggatca
ccttccgcatgggaaagatgggttttccattttgcacatctgcgccaactgcctgtgttg
gtcccgtacatcccaacagaaaatccaacattgcgtgatacagcttatgaggtagctctt
gttgctttggcaacaaatccatcttttcacaaggatctcgtatcaactgtcaaatcctgg
ccacctggcatttattctacatcgcctgtaatctcagctatagaatctcagcttaatacc
tcatctatgactgatcacctcaaagaggctctagcagaattatatgtgatcgagggacaa
catgataaagcttttgctctttatgcggatcttatgaagccggatctgtttgacttcatt
gaaaagcataatttgcatgatgctgtgcgtgaaaaggttgtccaactaatgatggttgac
agcaagcgtgctatacctttgttgatccagcatagggactttatatatccacccgaagtg
gtgtcacaacttatggctgcaaagactaagtgtgattgtcggtaccttttgcatttgtat
cttcattcactatttgaagtgaatcctcatgctggacgggattaccatgacatgcaggtc
gagctttatgctgactatgatccaaagatgatgcttccctttctcagaagtagtcagcat
tatacacttgagaaggcttatgatatctgcgtgaagagggatttattaaaggagcaagtt
ttcatccttggaagaatggggaatgcaaagcaggcccttgctattatcataaatagagtg
ggagatatagaagaggccatcgaatttgtaagcatgcaacatgatgatgaactctgggat
gagctgattaagcagagtcttaataagcctgaaatggttggtgtattgttggagcatact
gtagggaatcttgatccactttatattgtaaatatgttgcccaatggcttggaaatacct
cgtctgagagatcgtttggtcaaaattgtcactgattacagaacagaaacttctcttaga
catggatgtaatgacatactcaaggctgattgtgtcaacctgctagtcaaatactacaag
gaagcaaagcgtgcaatatgtttgagtgaggacgttgatcaagcacattccaaaagaaat
cagcagagggcttcacatttaggagagagagtcatgagtatgaaatccatggaggtcaag
tcaaaaaccagaggaggtggaaggtgttgcatatgttttgatccgttttctctactgaac
gtatcaattattgccttcttttgttgtcatgcctaccatacaacttgtctcatggagtcc
accatttccattggcggcgataaaaaagaggctggggcttcttccaagggcactgcgtca
tattatgaatttgataatggcagtgatgacgatgatgaagaagaagatgacgaagatgct
tcttcaggtacccctcggatgcgttgtattttgtgtactacagctgcaggttga
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integrated database retrieval system
