Solanum pennellii: 107004829
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Entry
107004829 CDS
T04130
Name
(RefSeq) probable NOT transcription complex subunit VIP2 isoform X2
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
spen
Solanum pennellii
Pathway
spen03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107004829
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spen03019
]
107004829
Messenger RNA biogenesis [BR:
spen03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107004829
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
107004829
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
107004829
NCBI-ProteinID:
XP_015058688
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All DBs
Position
11:65966371..65974883
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AA seq
660 aa
AA seq
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MSGLPNSSLKGSASNPSDNTGRSFPSSFPPQSGAASPLYHHSGSIQGLHNIHGSFNIANM
HGALGSRNTAINTVPPSGVQQSGNNLSGGRFSSNNLPASLSQISQGNSHVHSGMTSRGGM
SVVGNAGYSNNASGVGGSIPGLLPTSAGIGNRSSVPGLGVSQILGNAGPRMTNSVGNIVG
GGNIGRSISSAGLSVTNLASRLNMNANAGSGNLNVQGPNRIMSGVLQQASPQVLSMLGNS
YSAGGPLAQNHVQAMGNLNSLGLLNDVNSNDGSPFDINDFPQLSSRPSSAGGPQGQMGSL
RKQGISPIVQQNQEFSIQNEDFPALPGFKGGNADYAMDPHQKEQLHDNALSMMQQQHFSM
GRSTGFNLGGTYSSHRPQPQLQHAPSVSSTGVSFSNINNQDLLSLHGPDVFQSSQSNYHQ
QSGGPPGIGLRPLNSSSNVSGIGSYDQLIQAQQYQQHQGPSQFRLQQMSSLSQPYSLKSM
QSQVAPDPFGILGLLSVIQMNDPDLTSLALGIDLTTLGLNLNSAENLYKTFGSPWSDEPA
KGDPEFTAPQCYYAKQPPPLNQAYFSKFQLDTLFYIFYSMPKDEAQLYAANELYNRGWFY
HREHRLWFMRVANMEPLVKTNAYERGSYICFDPNTWETIRKDNFVVHYEMLEKRPVLPQH
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggattacccaattcttctctaaagggatcagcttcaaatccttctgacaacact
ggtcgctcatttccttcttcttttcctcctcaatctggtgcagcttctcctctttatcat
cactctggaagtattcaggggctgcataatattcatgggagtttcaacattgctaacatg
cacggagcacttggttcaagaaacacagcaataaataccgtccctcccagtggtgtccag
caatctggaaataacctttctggtggtcgtttttcgtcaaacaatcttccggcttccctt
tctcagatatctcaaggcaattctcacgttcattctggaatgacaagtagaggtggtatg
agtgttgttggtaatgcgggctatagcaataatgctagtggcgttggaggttctattcct
gggcttctcccaacttctgcaggaattggtaatcgaagctctgtgccaggtcttggggta
tcccaaattttaggtaatgcaggcccaaggatgaccaattcagtgggaaatattgttggt
gggggcaacattggcagaagcataagctctgcaggattgtctgtgactaatcttgcttca
cggttaaatatgaacgccaatgccggttccggaaatttaaatgttcaaggacctaatagg
ataatgagtggtgttcttcagcaagcctctccgcaggtactttctatgttaggaaattcc
tattctgctggtggtccactagctcaaaaccatgtccaagcaatgggaaaccttaattct
ttgggattgttgaatgatgtaaattcaaatgatggatctccttttgatatcaatgatttc
cctcagttaagcagtcgacctagttcggctggaggacctcaaggacaaatgggttctttg
cgaaaacaagggatcagtcctattgttcagcaaaaccaggaattcagcattcaaaatgaa
gattttcctgctttaccaggatttaaaggtgggaatgctgattatgcaatggatcctcac
cagaaagagcagcttcatgataatgctctttctatgatgcaacagcaacacttctcaatg
ggaagatccacaggttttaatttgggtggaacatattcatcacatcgtccgcagccgcag
ctgcaacatgctccatctgttagtagtaccggtgtctccttttcaaatataaacaaccag
gatctgctgagtttacatggtccagatgtcttccaatcatcgcagtccaattatcatcaa
cagagtggtggacctcccggtataggattacggcctcttaattcgtcaagtaatgtttct
ggtattggatcatatgatcagctcattcaggctcagcagtaccaacagcatcagggtcca
tcccaattcaggttgcagcagatgtcctctttaagtcagccatacagcttaaagtccatg
caatcccaagttgctcctgacccgtttggtatacttggtttgctaagtgtaatacagatg
aacgatccagatttgacttctcttgcacttggaattgatctaacaacacttggtttgaat
ttgaactctgctgagaatttgtacaagacttttggttccccatggtctgatgagcctgcc
aaaggggatccagaatttactgcaccccaatgttattatgcgaagcaacccccaccttta
aatcaagcatacttctcaaagtttcagctggatactttgttttacatattttacagcatg
ccaaaagatgaagcgcaactgtatgctgcaaatgaactgtataaccgcggatggttttat
cacagagaacatcggttgtggtttatgagggtcgccaacatggagcctcttgtcaagacg
aatgcatatgagagagggtcttacatttgttttgatccaaacacatgggagacaatccgt
aaggataattttgtcgtccactatgaaatgttggaaaaaagacctgttttacctcaacac
tga
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