KEGG   Solanum pennellii: 107005022
Entry
107005022         CDS       T04130                                 
Name
(RefSeq) THO complex subunit 4A
  KO
K12881  THO complex subunit 4
Organism
spen  Solanum pennellii
Pathway
spen03013  Nucleocytoplasmic transport
spen03015  mRNA surveillance pathway
spen03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:spen00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    107005022
  09122 Translation
   03013 Nucleocytoplasmic transport
    107005022
   03015 mRNA surveillance pathway
    107005022
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:spen03019]
    107005022
   03041 Spliceosome [BR:spen03041]
    107005022
Messenger RNA biogenesis [BR:spen03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     107005022
    TREX complex
     107005022
Spliceosome [BR:spen03041]
 Complex C
  Other components
   EJC/TREX
    107005022
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    107005022
SSDB
Motif
Pfam: RRM_1 FoP_duplication Btz DUF5320
Other DBs
NCBI-GeneID: 107005022
NCBI-ProteinID: XP_015058964
LinkDB
Position
11:66202410..66206316
AA seq 251 aa
MAEAALDMTLDDLIKKNKTGTGGKPRGRGRGAASTSSAGPSRRVPNRSANRAAPYSIAKA
PQASWNHDMFEADQAVAFGQAGGRASSIETGTKLYISNLDYGVSNEDIKELFSEIGDLKR
YAVHYDRSGRSKGTAEVVFSRRQDALAGVKRFNNVQLDGKPMKIEIVGTNIVTPTAPFSN
GAFGFGDTNGAPRSGQVRGGGFGRSRGARGRDRGFRGGNRGWGRGGRGEKVSAEDLDADL
MKYHTEAMQTN
NT seq 756 nt   +upstreamnt  +downstreamnt
atggctgaggcagctttggatatgactctcgacgatctcatcaagaagaataagaccggt
accggaggtaagcctcgtggcagaggccgcggcgccgcctccacctccagtgctggacct
tctcgacgggtccctaatcgttctgctaaccgagctgcaccttattccatcgccaaggcc
cctcaagcgtcgtggaatcatgatatgttcgaggcagatcaagccgtcgcctttggtcaa
gctggtggtcgggcgtcttccatagagactgggactaaactctacatctccaatcttgat
tacggcgtctccaatgaggatatcaaggagctcttttcagaaattggtgacctgaaacgt
tatgctgttcattatgataggagcgggagatcaaagggaacagcagaggtggttttctca
cgtagacaagatgcactagctggtgttaaaaggttcaacaatgttcagcttgatgggaag
ccaatgaagattgaaattgttggaaccaacattgtcactcctactgcccctttttccaat
ggagcttttggttttggagatactaatggagctcctagaagtggtcaagtaagaggtggt
ggttttgggaggtcacggggtgccagaggacgtgatcgtggatttcgaggaggcaacaga
ggatggggaagaggaggtcgtggagaaaaggtatctgcagaagatctagatgctgatttg
atgaaatatcatacagaagcaatgcaaacgaactga

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