Solanum pennellii: 107005125
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Entry
107005125 CDS
T04130
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
spen
Solanum pennellii
Pathway
spen03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107005125
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
spen03041
]
107005125
Enzymes [BR:
spen01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
107005125
Spliceosome [BR:
spen03041
]
Complex C
Other components
Step II factors
107005125
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
S1
DEAD
AAA_22
AAA_19
Cas3-like_C_2
AAA_30
nSTAND3
AAA_16
TsaE
Sigma54_activ_2
ABC_tran
Flavi_DEAD
PhoH
T2SSE
Motif
Other DBs
NCBI-GeneID:
107005125
NCBI-ProteinID:
XP_015059112
LinkDB
All DBs
Position
1:108252444..108256300
Genome browser
AA seq
1175 aa
AA seq
DB search
MGADIAENELKKLEYLSLISKVCSELEAHLGFGDKVLAEFITELGRNCLTVDEFDDKLKE
SGAEMPDYFVRTLLTIIHAILPPSAKSKSEKESNKDGNDSEFSALKIRDNRDRVKELEKE
IELEARSKRRDEKGEERDRRREGDRDYRRERGRDRRDRDRGRDRDRDDGRVERRASERRR
DRDGDGDVYAKGSRDDYEQDGDDDRRDRRKSRHHVDEPELYAVYKGRVSRVMDSGCFVQL
NEFRGKEGLVHVSQLATRRVSNAKDLVKRDQDVFVKVISISGQKLSLSMRDVDQNTGKDL
LPLKKSSDGGGLTTNPSGMNNEGSKTRIGLSGIRITEQEDVVPSRRPVKRMSSPEKWEAK
QLIAAGVLGVQEHPMFDEEGDGMLYQEEDGVDEELEVELNEDEPPFLQGQSRYSVDMSPV
KIFKNPEGSLSRAAALQSALIKERREVREQQQRTMLDSIPKDLNRPWEDPMPETGERHLA
QELRGVGLSAYDMPEWKKDAYGKAVTFGQRSKLSLQEQRQSLPIYKLKKELVQAVHDNQV
LVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQPRRVAATSVAKRVAEEFGCRLGEEVG
YAIRFEDCTGPETVIKYMTDGMLWREILIDDNLSQYSVIMLDEAHERTINTDVLFGLLKQ
LMKRRPDLRLIVTSATLDAEKFSGYFFDCNIFTIPGRTFPVEILYTKQPESDYLDASLIT
VMQIHLTEPEGDILLFLTGQEEIDYACQCLYERMKGLGKNVPELIILPVYSALPSEMQSR
IFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQAS
AKQRAGRAGRTGPGKCYRLYTESAFHSEMSPTAVPEIQRINLGNTVIMMKAMGINDLLSF
DFMDPPTPQALISAMEQLYTLGALDEEGLLTKLGRKMAEFPLDPPLSKMLLASVDFGCSD
EILTIIAMIQTGNVFYRPREKQAQADQKKAKFFQPEGDHLTLLAVYEAWKAKNFSGPWCF
ENFVQSRSLRRAQDVRKQLLSIMDKYKLDVVSAGRNFTKIQKAIGAGFFFHAARKDPQEG
YRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVVDPKWLVELAPRFFKT
ADPTKLTKRKRQERIEPLYDRYNEPNSWRLSKRRA
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
atgggagccgacatcgcagaaaacgagttgaagaaattggaatacctctcgctaatttct
aaggtatgttccgagttggaggcacatttagggtttggtgataaggttttagctgagttt
ataactgaacttggtagaaattgcttaacagtagatgaatttgatgacaaattgaaagaa
agtggtgctgaaatgcccgactatttcgtaagaacgttgctcactataatccatgctatt
ttgcctcctagtgccaagtccaagtcggagaaggagtcgaacaaggatggcaatgattcc
gagttttcagctctgaagatcagagataatagggatagggttaaggagttggagaaggag
attgagttggaggctaggagtaagaggagagatgaaaagggagaagaacgggataggagg
cgagagggggatagagattatagaagagaaaggggtagagacaggagggatagggatagg
ggtagggatcgagatagagatgatggtagagttgaacgcagggcttcagaaaggcgcaga
gacagggatggagatggagatgtatatgcaaagggtagtagagatgattatgagcaagac
ggggatgatgatcggagggataggagaaaatcgaggcatcatgtggatgagccagagttg
tatgcagtttataaggggagggtatcaagggtgatggattctggttgttttgttcagctg
aatgaatttagagggaaagaaggcttggtgcatgtttcacaacttgctactagaagggtt
agtaatgccaaagatttggtaaaacgtgaccaggacgtttttgtgaaggttatctctatt
agtgggcagaagctgagtttgtcaatgagagatgttgatcagaatacaggaaaggatctg
cttccattgaagaagagctctgacggtggtggattgacaacaaatccttcaggcatgaat
aatgagggctctaagaccaggattggcctgtcaggaattaggattacggagcaagaggat
gtagttccatcacgtagaccggtgaagaggatgagttcacctgaaaagtgggaagcgaaa
caacttattgctgcaggtgtcctgggggtccaggaacatcccatgtttgatgaagaaggg
gatggaatgctatatcaggaagaagatggtgttgatgaagagcttgaggttgaattgaat
gaagatgaaccccctttcttgcaagggcagagtcgttattcagttgatatgtctcctgtc
aaaatttttaaaaatcctgaaggatcattgagtcgtgctgctgcactacaatcagctttg
ataaaggagagaagggaagtaagggagcagcaacagagaacgatgcttgattctatccca
aaggatctcaacagaccatgggaagacccaatgccggagacaggtgagaggcatttggct
caggaactgaggggtgttggtttgtctgcctatgacatgccagaatggaaaaaagatgct
tatggtaaagccgtgacctttggccagaggtctaagctatccctccaggagcagaggcag
agtcttcctatttacaaattgaagaaagaactggttcaggctgtccatgataatcaggtc
ctggtcgtcattggtgaaacaggttctggcaagacaacacaggtgacacagtatctagcc
gaggcagggtatacaacgaggggaaaaattggctgtactcaacctcgtcgagtggctgcg
acatctgtcgctaagagagttgctgaggagtttggttgtcgattaggtgaggaggtcggt
tatgctattcgttttgaagattgtactgggccagaaactgttatcaaatatatgactgat
ggtatgctttggagggagatcctgattgatgataatttgtcccagtactcagtcataatg
cttgatgaagcacatgaaagaacgattaacactgatgttctctttggtttgcttaagcag
cttatgaagagaagacctgaccttcgtctaattgtcacgtctgcaactttggatgcagag
aaattttctggttatttctttgactgcaacatctttacaatcccaggaagaacttttcca
gttgagatactctacacaaagcagccagaaagtgattaccttgatgcgtctttaattact
gttatgcagatccacttgacagaacctgaaggtgatatcctcctcttcttgactggtcaa
gaggagattgattatgcttgccagtgtctctatgagaggatgaaaggactaggtaaaaat
gttcctgaactgatcatactacctgtctatagtgccttgcccagtgaaatgcagtccaga
atttttgatcctgcccctcctgggaaaagaaaagttgttgttgctacaaatattgctgaa
gcatctttgacaattgacggtatattctatgttattgatcctggatttgcaaagcaaaat
gtctacaatccaaaacagggtcttgattcacttgttattaccccaatttcacaagcatcg
gcaaagcaacgagcagggcgtgctggacgtactggacctgggaagtgctaccgtctgtat
actgagagtgcattccatagtgaaatgtctcctactgcagttccagaaatccagaggata
aatcttgggaacaccgttattatgatgaaagcaatgggtattaatgatcttttgtcattt
gatttcatggacccacctacccctcaggctctcatatctgccatggagcaactttacact
cttggagcactggatgaagaggggcttctgacgaaactgggaagaaaaatggcagaattc
ccattagatcctcctttgtccaagatgcttcttgctagtgtggacttcggttgtagtgat
gagatcttgaccatcattgctatgattcaaactggaaacgtcttttaccgaccaagggaa
aaacaagctcaggccgatcagaaaaaggccaaattttttcagcctgagggtgatcatctt
accttgcttgctgtttacgaggcttggaaagcgaaaaacttttcaggtccatggtgtttt
gaaaattttgttcagtcacgatcacttaggagggcacaggatgtcagaaaacagttgctc
tccatcatggacaagtataaattggatgttgtgagtgccggaaggaacttcacaaagatc
cagaaggctattggagcaggtttcttttttcatgctgctagaaaggatcctcaagagggc
tatagaactttagttgagaaccagccagtttacatccatcctagcagtgctcttttccaa
agacagccggactgggttatttatcacgagcttgttatgacaacaaaggagtacatgcgt
gaggtgaccgtggtagatcctaaatggcttgttgagttggcaccaagattcttcaagacg
gctgacccaacaaaattaacgaagcgcaagagacaggaacgtattgaacctctttatgat
agatataatgagccaaattcatggcgattgagtaaacgccgagcgtga
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