Solanum pennellii: 107005126
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Entry
107005126 CDS
T04130
Name
(RefSeq) probable pectate lyase 13 isoform X1
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
spen
Solanum pennellii
Pathway
spen00040
Pentose and glucuronate interconversions
spen01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
107005126
Enzymes [BR:
spen01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
107005126
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
WSS_VP
Motif
Other DBs
NCBI-GeneID:
107005126
NCBI-ProteinID:
XP_015059109
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Position
11:2448700..2455798
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AA seq
489 aa
AA seq
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MFSLICILLFCLLVSFFPQIIVSFNLTLPHQHPYPEVVVQEVQRKVNESISRRQLLNTTM
NAITTQCETGNPIDDCWRCDPNWSKNRQRLADCAIGFGQNAIGGKNGKYYVVSDSSDLDT
VNPTQGTLRHAVIQEEPLWIIFSGDMFIKLKHELIVNSYKTIDGRGAKVHITGNGCITLQ
YISNVIIHNIHIYNCLPSGNTDIRSTPTHVGHRGRSDGDGISIFSSRNIWIDHCALSHCT
DGLIDAIMGSTGITISNSYFSHHDEVMLLGHDDSYSPDAGMQVTIAFNHFGVGLVQRMPR
CRRGYIHVVNNDFTEWQMYAIGGSANPTINSQGNRYTAPVDANAKEVTKRVETDEREWSG
WNWRTDGDIMVNGAFFVPSGEGLGNQYAKASSVEPKSAAIIDQLTLNAGVFGAPRDKSIS
ISYGGGTTTGASGSGGGGSTGAGDDSDFFGMMFGSGAPQKLSSTTHYTILLSLLIMLFLY
TNQLFLILL
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atgttttctcttatatgcattctcttgttttgtttgttagtatcttttttcccacaaatt
atagtttcctttaatctcacacttcctcatcaacatccttaccctgaagttgtggttcaa
gaagtacaaaggaaggtgaatgaatcgatttcgagaaggcaactattgaacaccaccatg
aacgccataactactcaatgtgaaaccggaaatccaatcgacgattgctggcgctgcgat
ccaaattggtcgaaaaaccggcagcgtttagccgattgcgctataggtttcggccagaac
gcaatcggaggtaaaaacggcaaatactacgtcgtttccgattcctcagatctcgacacc
gtaaatccaactcagggaacactccggcacgctgtaatccaggaagaaccactctggatc
atcttctccggcgatatgttcataaaattgaaacacgaactcatcgttaacagttacaaa
acaatcgacggccggggagcgaaagttcacatcaccggtaacggatgcataacgttgcag
tatattagcaatgtgattatacacaatattcatatttacaattgtttaccgtcgggaaat
actgatatacggtcgacgccgacgcacgtcggtcaccggggtagatcggacggcgacggg
atctcgatattttcgtcacggaatatatggattgatcattgtgctttatcgcattgtact
gatggcttaattgatgctattatggggtccactggtataacgatttctaatagctatttc
agtcaccatgatgaagttatgctattgggacatgatgatagttactcgcctgatgccgga
atgcaggtgacaatagcatttaatcattttggagtaggattagtacaaaggatgccaaga
tgtagaagaggatatatacatgtagtcaacaatgattttactgaatggcaaatgtatgca
attggaggaagtgctaatcctacaattaatagtcaaggcaatcgatatactgcaccagtc
gatgctaatgctaaagaggtgacaaagcgcgtggagacagacgagagagagtggagtggg
tggaattggagaacagatggagatataatggtaaatggagcattttttgtgccatcaggt
gaaggactcggtaaccaatacgcgaaagcctcgagcgtggagcccaaatccgctgctatt
attgatcaactcactcttaatgctggtgtttttggtgccccaagggataaaagtataagt
atatcctatggaggagggaccaccaccggagctagcgggagtggcggtggggggtccacc
ggcgccggcgatgatagtgatttttttggaatgatgtttgggagcggcgcaccacaaaaa
ttatcatcaaccactcattatactatcttattatctcttttaattatgttatttttgtac
accaaccaattatttttaatcttactatag
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