KEGG   Solanum pennellii: 107005340
Entry
107005340         CDS       T04130                                 
Name
(RefSeq) WD repeat-containing protein VIP3-like
  KO
K12602  WD repeat-containing protein 61
Organism
spen  Solanum pennellii
Pathway
spen03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:spen00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    107005340
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:spen03019]
    107005340
Messenger RNA biogenesis [BR:spen03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Ski complex
     107005340
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_THOC3 WD40 Beta-prop_WDR3_1st WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_WDR3_2nd Beta-prop_EML_2 Beta-prop_WDR90_POC16_2nd WD40_Gbeta WDR55 Beta-prop_CAF1B_HIR1 Beta-prop_WDR36-Utp21_2nd EIF3I WD40_MABP1-WDR62_2nd Beta-prop_TEP1_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_EML ANAPC4_WD40 Beta-prop_RIG_2nd Beta-prop_WDR75_1st WD40_MABP1-WDR62_1st Beta-prop_Aladin WDR90_beta-prop_4th Beta-prop_IFT122_1st Beta-prop_Vps41 WD40_RFWD3 Beta-prop_EIPR1 Beta-prop_WDR19_1st NBCH_WD40 Beta-prop_TEP1_C Beta-prop_HPS5 Beta-prop_IFT140_1st Beta-prop_NUP159_NUP214 Beta-prop_WDR41 Ge1_WD40 CFAP43_N Beta-prop_SPT8 Beta-prop_WDR35_TULP_N Beta-prop_SCAP Beta-prop_WDR11_1st Beta-prop_DCAF12 Beta-prop_DCAF4 Beta-prop_WDR75_2nd Beta-prop_VPS8 PEP5_VPS11_N Beta-prop_ACSF4 Cytochrom_D1 Tricorn_2nd WD40_like Nbas_N Tricorn_N WDR54 Beta-prop_pof12 Beta-prop_LRRK2 DUF2415
Other DBs
NCBI-GeneID: 107005340
NCBI-ProteinID: XP_015059392
UniProt: A0ABM1FNH1
LinkDB
Position
12:2594738..2598247
AA seq 323 aa
MKLASLDSVTNAHDDSIWSAAWVRSTEEYPALLLTGGLDETVRLWDPSNFTCVQTFTGHC
LGVVSVATHPTRRIAASASIDSFIRVFEVDTNNTIATLEAPPSEVWQLQFSPSGSNLAAA
GGGSSSVKVWDTNRWELVTTMSIPRQGAPQPSDKSTNKKFVLSVAWSPDGRLLACGSVDG
TISVFDVARAKFLHFLDGHTMPVRSLVFSPSLHDSRILFSASDDGHVHMYDAEGKTLLTS
LSGHASWVLSVDTSPDGAAIATGSSDKTVRLWDLKMRAATQTLTNHTDQVWAVAFGPTSR
TDVRSCMLASVSDDKSLSFYQYS
NT seq 972 nt   +upstreamnt  +downstreamnt
atgaaactagcttcactagacagtgtgacaaatgctcacgacgattccatttggtcggcg
gcgtgggtccggtcgacggaggaatatccggcgttacttctcaccggaggtcttgacgaa
actgtgaggttatgggacccgagtaacttcacttgtgttcaaactttcaccggtcattgt
ctcggcgttgtatctgttgctacacatcctactcgtagaattgctgcatctgcttctata
gatagctttattagagtttttgaggttgatactaataacactattgctactctcgaagct
cctccttctgaagtctggcaattgcaatttagtccaagtggtagcaatctggcagcagct
ggaggtggtagttcatcagtcaaggtgtgggatactaatcggtgggaacttgttaccaca
atgtccattcctcgtcaaggagccccacaaccatctgataaaagcaccaacaagaaattt
gtcctttcagttgcatggagtcctgatggtaggcttcttgcttgtggatcagttgatggg
actatttctgtttttgatgtagctcgcgccaagttccttcacttcttagatggccatacc
atgcctgttcgttctctcgtgttttcaccttcacttcacgactcaagaatactcttctca
gcatcagatgatggtcatgtgcatatgtatgatgcggaggggaaaacattgctcacgtct
ttatcgggtcatgcaagttgggttctgagtgttgatacctctccagacggggcagcaatt
gcaacggggtcaagtgacaagacggttaggctatgggatcttaagatgagagcggctacg
caaactttaaccaaccatacagatcaggtttgggctgtggcttttggaccaacatcaagg
actgatgttaggtcctgtatgcttgcaagtgtgtctgatgacaagagtttatcattctat
cagtactcttaa

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