Solanum pennellii: 107005345
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Entry
107005345 CDS
T04130
Name
(RefSeq) oligouridylate-binding protein 1-like isoform X1
KO
K13201
nucleolysin TIA-1/TIAR
Organism
spen
Solanum pennellii
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spen03019
]
107005345
03041 Spliceosome [BR:
spen03041
]
107005345
Messenger RNA biogenesis [BR:
spen03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
107005345
Spliceosome [BR:
spen03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
107005345
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_5
RRM_PARP14_3
RRM_occluded
Cas_Cas2CT1978
RRM_8
RRM_Nup35
Motif
Other DBs
NCBI-GeneID:
107005345
NCBI-ProteinID:
XP_015059398
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All DBs
Position
12:complement(2768227..2774495)
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AA seq
401 aa
AA seq
DB search
MMQQQRLKQQQGLMQQSLYHPGLIASPQIEPILSGNLPPGFDSTTCRSVYVGNISPQVTE
QLLQEVFSSTGPLEGCKLIRKDKSSYGFVDYFDRQSAALAIVSLNGRQLFGQCIKVNWAY
ASAKREDTSNHFSIFVGDLSPEVTDSTLFACFSVYPSCSDARVMWDQKIGRSRGFGFVSF
RDQQEAQSAINDLNGKWLGSRQIRCNWAAKGAGAGNDNRSSDAKSAVELTTGTSDDGQLK
ANEDAPENNPQYTTVYVGNLAPDVTTIDLHRYFHALGAGVIADVRIQRDRGFGFVRYSNH
AEAARAIQLGNARILFGKPIKCSWGSKPTPPGSSTNPLPPPVIRQLPGISAMGLAMYERQ
VALARMTGMQTLMQHQGQRIGVASQVLYDGGIASPQPPIYY
NT seq
1206 nt
NT seq
+upstream
nt +downstream
nt
atgatgcaacagcaaaggctgaaacaacagcaaggattgatgcaacaatccctttatcat
cctggtctcatagcatcccctcagatagagcccatcttgagtggaaatctgcctcctgga
tttgattcaactacttgcaggagtgtgtatgttggaaacatcagtcctcaagtcacggaa
caacttcttcaagaggttttctcaagtaccggtccccttgagggttgtaagcttataagg
aaggacaagtcgtcctatgggtttgtggattattttgatcgccaatcagctgcgcttgct
attgtgagcctcaatggaaggcaattgtttggacagtgtataaaagttaactgggcttat
gccagtgctaaaagagaggacacatccaatcattttagcatatttgttggtgatcttagt
ccggaggttacagattccacactgtttgcgtgcttttcagtataccctagctgctcagat
gcaagagtgatgtgggatcagaaaataggccggtctagagggtttgggtttgtttccttt
cgtgatcagcaggaagcccaaagtgcaataaatgatttgaatggaaagtggcttggaagc
cgacaaatccgctgcaactgggcagcaaaaggtgctggagccggtaatgacaaccggagt
tcagatgctaaaagtgctgttgagttgacgactggaacatcagatgatggtcaactgaag
gccaacgaagacgctccagaaaataatccgcagtacacaactgtatatgttggcaacctt
gctcctgatgtcactaccattgacctccatcgttattttcatgctcttggggctggtgtt
attgctgatgtccgtattcagcgagacagaggatttggctttgtacgatacagcaatcat
gctgaagcagctcgagcaattcaattgggaaatgctcgaatcctctttggtaaacctatt
aagtgctcatggggaagcaagccaactccaccaggaagcagcacgaaccctctaccacct
cctgttatcagacaactccctggcatttcagccatgggtcttgcgatgtacgagaggcag
gttgctttggctagaatgactggtatgcagactctcatgcaacaccagggacagcgaatt
ggcgttgctagtcaggttctgtatgatggtggcattgcttccccgcagccaccgatatac
tactag
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