Solanum pennellii: 107005400
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Entry
107005400 CDS
T04130
Name
(RefSeq) BRCA1-associated RING domain protein 1-like
KO
K10683
BRCA1-associated RING domain protein 1
Organism
spen
Solanum pennellii
Pathway
spen03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
107005400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spen03019
]
107005400
04121 Ubiquitin system [BR:
spen04121
]
107005400
03036 Chromosome and associated proteins [BR:
spen03036
]
107005400
03400 DNA repair and recombination proteins [BR:
spen03400
]
107005400
Messenger RNA biogenesis [BR:
spen03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
107005400
Ubiquitin system [BR:
spen04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
107005400
Chromosome and associated proteins [BR:
spen03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
107005400
DNA repair and recombination proteins [BR:
spen03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
107005400
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
BRCT_2
zf-HC5HC2H
zf-HC5HC2H_2
PHD_NSD
RTT107_BRCT_5
PTCB-BRCT
Motif
Other DBs
NCBI-GeneID:
107005400
NCBI-ProteinID:
XP_015059469
LinkDB
All DBs
Position
12:complement(55835301..55844747)
Genome browser
AA seq
449 aa
AA seq
DB search
MDIKQQKKLNSGLSEMSLESHDHILQRCPSSEIVADSNCNLEYKICESPNVVQPKAVIDQ
HPPKASLCAFCYSAKTTEITGPFLYFANGREVVGNVTSLSKVICVHSKCIEWTPQVYYEG
EIIKNLDTELARATKLKCSSCGMKGAALGCYMTSCRRSYHVPCAFEIQDCQWDMENFVML
CPVHISVKFPSEESKSIEHIRREMHPKASPLTTEQLTFWARSSDGPKEWVLCGSALSSED
KYMLVKFADMCGATVCKFWKPNVTHVVATTDVKGACTRTMKVLMAILSGKWILTMDWVKA
CVAANGPVNEELYEISLDNYGRSGGPKAGRLMASTNGPKLFDGFEFYFIGDFMPDYKSDL
LDLVEKAGGTVIQSEEQLMKQNHAAQGTQPSSLVVYNCDLSRGCFEEKIRILQQRLAEAE
DLAEQIGCQTVQHTWILESIAACKLVPFC
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
atggatattaagcagcaaaagaaactaaactctggtttgtccgaaatgagcttagaaagt
catgatcatattctccaaagatgccctagttctgaaattgttgctgattccaactgcaat
ttggagtataaaatatgtgaatctcctaatgttgttcagccaaaagcagttatagatcaa
catcctccgaaagcaagtctttgtgctttctgttattctgctaagaccacagagataact
ggaccttttttgtactttgcaaatggaagggaagttgtgggtaatgttacttctctttcc
aaagtcatatgtgtgcacagtaagtgcattgaatggacacctcaagtatattatgaagga
gaaattataaaaaatttggacaccgagttggcaagagctacaaaactcaagtgtagtagt
tgtggcatgaagggcgcagcacttggctgctacatgacgtcttgcaggaggagttatcat
gtgccctgtgcatttgaaatccaggattgccaatgggatatggagaactttgtgatgctg
tgcccagttcatatatctgttaaatttccaagtgaggagtcaaagtctatagaacatatc
aggagggaaatgcatccaaaggcttctcccctaaccaccgagcaattgactttttgggca
agatcatcagatggaccaaaagaatgggttctttgtgggtctgctctatcctcagaagat
aagtatatgttggtgaaatttgctgatatgtgtggtgcaactgtgtgcaagttctggaaa
ccaaatgtcacacatgttgttgcaacaactgatgtaaagggtgcatgcaccagaacaatg
aaagttctcatggcgattttgagtggaaaatggatcctaactatggattgggtaaaagct
tgtgttgcagcaaatggtccagtaaatgaagaactttatgaaataagtctagacaattat
ggccgttctgggggccccaaagctggaaggttgatggcctcaactaatgggccaaagctt
tttgatggtttcgagttttattttattggagattttatgccagattacaaaagtgacctg
ttagatctagtcgagaaggccggaggcactgtcattcagagtgaggagcagttgatgaaa
cagaatcatgctgcacagggaactcagccatcttctctagtcgtatataactgtgatcta
tcgcggggttgctttgaagaaaaaatcagaattttgcagcaaagattagcagaagctgag
gatctagccgagcaaatcggttgtcagaccgttcagcatacttggattctggaatctatt
gctgcatgtaaattggtacctttctgctga
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